Gene annotation
Transcriptome id Sobic.005G003800.1
Synonym Sb05g000460
Functional annotation ribosomal protein L10, putative, expressed
UniProt C5Y2Z2
Pfam PF00466
Panther DB PTHR21141 PTHR21141:SF37
NCBI CDD KOG0816; Protein involved in mRNA turnover
KEGG Orthology K14815; mRNA turnover protein 4
Gene Ontology GO:0005622; intracellular


Orthologs (automatic annotation)
TAIR AT1G25260 : Ribosomal protein L10 family protein
RAP-DB (Rice) LOC_Os11g01420.1 : ribosomal protein L10, putative, expressed
MaizeGDB (Corn) Zm00025a028933 , Zm00025a012803 , Zm00025a013218
Brachypodium KQJ92639
Barley -
Wheat TraesCS5D02G158600 , TraesCS5D02G158600 , TraesCS5B02G152500 , TraesCS5A02G153300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G004000 ribosomal protein L10, putative, expressed K14815: mRNA turnover protein 4
2 Sobic.009G190300 Brix domain containing protein, putative, expressed K14847: ribosome production factor 2
3 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
4 Sobic.010G100000 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
5 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
6 Sobic.009G232000 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
7 Sobic.009G065400 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
8 Sobic.002G364100 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
9 Sobic.010G046300 rRNA-processing protein FCF, putative, expressed K14566: UTP24, U3 small nucleolar RNA-associated protein 24
10 Sobic.009G228800 dolichol phosphate-mannose biosynthesis regulatory protein, putative, expressed K09658: dolichol phosphate-mannose biosynthesis regulatory protein
11 Sobic.002G364500 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
12 Sobic.004G002350 - K11088: SNRPD3, small nuclear ribonucleoprotein D3
13 Sobic.001G216200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
14 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
15 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
16 Sobic.002G413400 ribosomal protein, putative, expressed K14842: ribosome biogenesis protein NSA2
17 Sobic.003G063300 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
18 Sobic.004G212200 enhancer of rudimentary protein, putative, expressed -
19 Sobic.001G021300 elongation factor, putative, expressed K03234: elongation factor 2
20 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2


Gene co-expression network
sample Sobic005G003800 Sobic005G003800 Sobic008G004000 Sobic008G004000 Sobic005G003800--Sobic008G004000 Sobic009G190300 Sobic009G190300 Sobic005G003800--Sobic009G190300 Sobic001G018800 Sobic001G018800 Sobic005G003800--Sobic001G018800 Sobic010G100000 Sobic010G100000 Sobic005G003800--Sobic010G100000 Sobic001G481700 Sobic001G481700 Sobic005G003800--Sobic001G481700 Sobic009G232000 Sobic009G232000 Sobic005G003800--Sobic009G232000 Sobic009G065400 Sobic009G065400 Sobic005G003800--Sobic009G065400 Sobic002G364100 Sobic002G364100 Sobic005G003800--Sobic002G364100 Sobic010G046300 Sobic010G046300 Sobic005G003800--Sobic010G046300 Sobic008G004000--Sobic005G003800 Sobic008G004000--Sobic009G232000 Sobic008G004000--Sobic009G190300 Sobic008G004000--Sobic009G065400 Sobic008G004000--Sobic001G018800 Sobic001G011200 Sobic001G011200 Sobic008G004000--Sobic001G011200 Sobic001G216200 Sobic001G216200 Sobic008G004000--Sobic001G216200 Sobic008G004000--Sobic010G100000 Sobic002G364500 Sobic002G364500 Sobic008G004000--Sobic002G364500 Sobic009G190300--Sobic005G003800 Sobic009G190300--Sobic008G004000 Sobic009G190300--Sobic001G481700 Sobic002G341800 Sobic002G341800 Sobic009G190300--Sobic002G341800 Sobic003G338100 Sobic003G338100 Sobic009G190300--Sobic003G338100 Sobic002G394600 Sobic002G394600 Sobic009G190300--Sobic002G394600 Sobic001G091900 Sobic001G091900 Sobic009G190300--Sobic001G091900 Sobic001G404100 Sobic001G404100 Sobic009G190300--Sobic001G404100 Sobic004G216400 Sobic004G216400 Sobic009G190300--Sobic004G216400 Sobic001G340500 Sobic001G340500 Sobic001G018800--Sobic001G340500 Sobic006G137100 Sobic006G137100 Sobic001G018800--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic001G018800--Sobic006G213000 Sobic009G227400 Sobic009G227400 Sobic001G018800--Sobic009G227400 Sobic003G018600 Sobic003G018600 Sobic001G018800--Sobic003G018600 Sobic009G166500 Sobic009G166500 Sobic001G018800--Sobic009G166500 Sobic001G018800--Sobic001G011200 Sobic009G242400 Sobic009G242400 Sobic001G018800--Sobic009G242400 Sobic010G023900 Sobic010G023900 Sobic001G018800--Sobic010G023900 Sobic001G513500 Sobic001G513500 Sobic010G100000--Sobic001G513500 Sobic010G100000--Sobic001G011200 Sobic005G050500 Sobic005G050500 Sobic010G100000--Sobic005G050500 Sobic001G436200 Sobic001G436200 Sobic010G100000--Sobic001G436200 Sobic003G280700 Sobic003G280700 Sobic010G100000--Sobic003G280700 Sobic010G100000--Sobic001G481700 Sobic005G091700 Sobic005G091700 Sobic010G100000--Sobic005G091700 Sobic010G100000--Sobic001G018800 Sobic002G406500 Sobic002G406500 Sobic010G100000--Sobic002G406500 Sobic001G025600 Sobic001G025600 Sobic001G481700--Sobic001G025600 Sobic004G224900 Sobic004G224900 Sobic001G481700--Sobic004G224900 Sobic001G481700--Sobic010G100000 Sobic001G481700--Sobic002G341800 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200 Sobic009G232000--Sobic001G018800 Sobic009G232000--Sobic001G011200 Sobic009G232000--Sobic001G513500 Sobic009G232000--Sobic001G436200 Sobic002G056200 Sobic002G056200 Sobic009G232000--Sobic002G056200 Sobic001G377800 Sobic001G377800 Sobic009G232000--Sobic001G377800 Sobic009G232000--Sobic010G100000 Sobic003G321700 Sobic003G321700 Sobic009G232000--Sobic003G321700 Sobic009G232000--Sobic006G213000 Sobic001G046300 Sobic001G046300 Sobic009G065400--Sobic001G046300 Sobic010G182600 Sobic010G182600 Sobic009G065400--Sobic010G182600 Sobic003G025200 Sobic003G025200 Sobic009G065400--Sobic003G025200 Sobic009G065400--Sobic001G011200 Sobic009G065400--Sobic002G364100 Sobic009G065400--Sobic001G377800 Sobic002G259000 Sobic002G259000 Sobic009G065400--Sobic002G259000 Sobic002G374900 Sobic002G374900 Sobic009G065400--Sobic002G374900 Sobic010G182300 Sobic010G182300 Sobic009G065400--Sobic010G182300 Sobic002G364100--Sobic002G364500 Sobic002G364100--Sobic001G046300 Sobic009G163800 Sobic009G163800 Sobic002G364100--Sobic009G163800 Sobic006G260400 Sobic006G260400 Sobic002G364100--Sobic006G260400 Sobic009G022400 Sobic009G022400 Sobic002G364100--Sobic009G022400 Sobic002G364100--Sobic010G182600 Sobic001G091801 Sobic001G091801 Sobic002G364100--Sobic001G091801 Sobic010G166100 Sobic010G166100 Sobic002G364100--Sobic010G166100 Sobic004G331400 Sobic004G331400 Sobic002G364100--Sobic004G331400 Sobic010G046300--Sobic001G481700 Sobic010G151000 Sobic010G151000 Sobic010G046300--Sobic010G151000 Sobic008G073300 Sobic008G073300 Sobic010G046300--Sobic008G073300 Sobic002G113800 Sobic002G113800 Sobic010G046300--Sobic002G113800 Sobic007G045600 Sobic007G045600 Sobic010G046300--Sobic007G045600 Sobic010G046300--Sobic005G003800 Sobic007G118000 Sobic007G118000 Sobic010G046300--Sobic007G118000 Sobic006G220700 Sobic006G220700 Sobic010G046300--Sobic006G220700 Sobic010G046300--Sobic004G224900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.