Gene annotation
Transcriptome id Sobic.010G046300.1
Synonym Sb10g004030
Functional annotation rRNA-processing protein FCF, putative, expressed
UniProt C5Z4F8
Pfam PF04900
Panther DB PTHR12416 PTHR12416:SF2
NCBI CDD KOG3165; Predicted nucleic-acid-binding protein, contains PIN domain
KEGG Orthology K14566; UTP24, U3 small nucleolar RNA-associated protein 24
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G46230 : PIN domain-like family protein
RAP-DB (Rice) LOC_Os06g06410.2 : rRNA-processing protein FCF, putative, expressed
MaizeGDB (Corn) Zm00025a049970 , Zm00025a049969
Brachypodium -
Barley HORVU7Hr1G024890.1 , HORVU7Hr1G024890.2 , HORVU7Hr1G024890.3
Wheat TraesCS7A02G117600 , TraesCS7B02G014700 , TraesCS7B02G014700 , TraesCS7D02G113200 , TraesCS7D02G113200
Populus -


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cDNA sequences
Sobic.010G046300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
2 Sobic.010G151000 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3
3 Sobic.008G073300 clathrin adaptor complex small chain domain containing protein, expressed K11827: AP-2 complex subunit sigma-1
4 Sobic.002G113800 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
5 Sobic.007G045600 MSP domain containing protein, expressed -
6 Sobic.005G003800 ribosomal protein L10, putative, expressed K14815: mRNA turnover protein 4
7 Sobic.007G118000 double-stranded RNA binding motif containing protein, expressed -
8 Sobic.006G220700 signal recognition particle 14 kDa protein, putative, expressed K03104: signal recognition particle subunit SRP14
9 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
10 Sobic.002G413400 ribosomal protein, putative, expressed K14842: ribosome biogenesis protein NSA2
11 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
12 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
13 Sobic.010G100000 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
14 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
15 Sobic.008G130400 prefoldin, putative, expressed -
16 Sobic.008G004000 ribosomal protein L10, putative, expressed K14815: mRNA turnover protein 4
17 Sobic.009G088100 helix-loop-helix DNA-binding domain containing protein, expressed -
18 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
19 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
20 Sobic.009G232000 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e


Gene co-expression network
sample Sobic010G046300 Sobic010G046300 Sobic001G481700 Sobic001G481700 Sobic010G046300--Sobic001G481700 Sobic010G151000 Sobic010G151000 Sobic010G046300--Sobic010G151000 Sobic008G073300 Sobic008G073300 Sobic010G046300--Sobic008G073300 Sobic002G113800 Sobic002G113800 Sobic010G046300--Sobic002G113800 Sobic007G045600 Sobic007G045600 Sobic010G046300--Sobic007G045600 Sobic005G003800 Sobic005G003800 Sobic010G046300--Sobic005G003800 Sobic007G118000 Sobic007G118000 Sobic010G046300--Sobic007G118000 Sobic006G220700 Sobic006G220700 Sobic010G046300--Sobic006G220700 Sobic004G224900 Sobic004G224900 Sobic010G046300--Sobic004G224900 Sobic001G025600 Sobic001G025600 Sobic001G481700--Sobic001G025600 Sobic001G481700--Sobic004G224900 Sobic010G100000 Sobic010G100000 Sobic001G481700--Sobic010G100000 Sobic002G341800 Sobic002G341800 Sobic001G481700--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200 Sobic010G151000--Sobic010G046300 Sobic010G151000--Sobic002G113800 Sobic007G142500 Sobic007G142500 Sobic010G151000--Sobic007G142500 Sobic010G151000--Sobic007G118000 Sobic001G033500 Sobic001G033500 Sobic010G151000--Sobic001G033500 Sobic010G073100 Sobic010G073100 Sobic010G151000--Sobic010G073100 Sobic010G151000--Sobic001G458700 Sobic002G281300 Sobic002G281300 Sobic010G151000--Sobic002G281300 Sobic006G044600 Sobic006G044600 Sobic010G151000--Sobic006G044600 Sobic004G066800 Sobic004G066800 Sobic008G073300--Sobic004G066800 Sobic008G073300--Sobic007G045600 Sobic002G371100 Sobic002G371100 Sobic008G073300--Sobic002G371100 Sobic010G114700 Sobic010G114700 Sobic008G073300--Sobic010G114700 Sobic010G154700 Sobic010G154700 Sobic008G073300--Sobic010G154700 Sobic003G386100 Sobic003G386100 Sobic008G073300--Sobic003G386100 Sobic008G073300--Sobic001G025600 Sobic003G155400 Sobic003G155400 Sobic008G073300--Sobic003G155400 Sobic001G089500 Sobic001G089500 Sobic008G073300--Sobic001G089500 Sobic002G113800--Sobic010G073100 Sobic003G259700 Sobic003G259700 Sobic002G113800--Sobic003G259700 Sobic002G113800--Sobic001G033500 Sobic001G010400 Sobic001G010400 Sobic002G113800--Sobic001G010400 Sobic002G113800--Sobic010G046300 Sobic002G113800--Sobic010G151000 Sobic006G114400 Sobic006G114400 Sobic002G113800--Sobic006G114400 Sobic002G113800--Sobic007G142500 Sobic006G217700 Sobic006G217700 Sobic002G113800--Sobic006G217700 Sobic007G114200 Sobic007G114200 Sobic007G045600--Sobic007G114200 Sobic007G019100 Sobic007G019100 Sobic007G045600--Sobic007G019100 Sobic003G124800 Sobic003G124800 Sobic007G045600--Sobic003G124800 Sobic006G232200 Sobic006G232200 Sobic007G045600--Sobic006G232200 Sobic003G261400 Sobic003G261400 Sobic007G045600--Sobic003G261400 Sobic007G045600--Sobic007G142500 Sobic004G086600 Sobic004G086600 Sobic007G045600--Sobic004G086600 Sobic001G461900 Sobic001G461900 Sobic007G045600--Sobic001G461900 Sobic007G045600--Sobic007G118000 Sobic008G004000 Sobic008G004000 Sobic005G003800--Sobic008G004000 Sobic009G190300 Sobic009G190300 Sobic005G003800--Sobic009G190300 Sobic001G018800 Sobic001G018800 Sobic005G003800--Sobic001G018800 Sobic005G003800--Sobic010G100000 Sobic005G003800--Sobic001G481700 Sobic009G232000 Sobic009G232000 Sobic005G003800--Sobic009G232000 Sobic009G065400 Sobic009G065400 Sobic005G003800--Sobic009G065400 Sobic002G364100 Sobic002G364100 Sobic005G003800--Sobic002G364100 Sobic005G003800--Sobic010G046300 Sobic007G118000--Sobic007G045600 Sobic007G118000--Sobic001G033500 Sobic001G402300 Sobic001G402300 Sobic007G118000--Sobic001G402300 Sobic003G374000 Sobic003G374000 Sobic007G118000--Sobic003G374000 Sobic004G072800 Sobic004G072800 Sobic007G118000--Sobic004G072800 Sobic007G118000--Sobic002G281300 Sobic001G067900 Sobic001G067900 Sobic007G118000--Sobic001G067900 Sobic004G141700 Sobic004G141700 Sobic007G118000--Sobic004G141700 Sobic001G323300 Sobic001G323300 Sobic007G118000--Sobic001G323300 Sobic010G153100 Sobic010G153100 Sobic006G220700--Sobic010G153100 Sobic001G331900 Sobic001G331900 Sobic006G220700--Sobic001G331900 Sobic003G362400 Sobic003G362400 Sobic006G220700--Sobic003G362400 Sobic008G132800 Sobic008G132800 Sobic006G220700--Sobic008G132800 Sobic004G107600 Sobic004G107600 Sobic006G220700--Sobic004G107600 Sobic005G157200 Sobic005G157200 Sobic006G220700--Sobic005G157200 Sobic002G078400 Sobic002G078400 Sobic006G220700--Sobic002G078400 Sobic001G529000 Sobic001G529000 Sobic006G220700--Sobic001G529000 Sobic002G116200 Sobic002G116200 Sobic006G220700--Sobic002G116200 Sobic003G330500 Sobic003G330500 Sobic004G224900--Sobic003G330500 Sobic006G252200 Sobic006G252200 Sobic004G224900--Sobic006G252200 Sobic004G224900--Sobic007G176200 Sobic004G138800 Sobic004G138800 Sobic004G224900--Sobic004G138800 Sobic007G076300 Sobic007G076300 Sobic004G224900--Sobic007G076300 Sobic004G224900--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic004G224900--Sobic001G502200 Sobic004G224900--Sobic001G458700 Sobic001G236300 Sobic001G236300 Sobic004G224900--Sobic001G236300
Octagon: transcription factors


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