Gene annotation
Transcriptome id Sobic.002G413400.2
Synonym Sb02g042600
Functional annotation ribosomal protein, putative, expressed
UniProt A0A1B6QG83
Pfam PF01201
Panther DB PTHR12642 PTHR12642:SF0
NCBI CDD KOG3163; Uncharacterized conserved protein related to ribosomal protein S8E
KEGG Orthology K14842; ribosome biogenesis protein NSA2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G06360 : Ribosomal protein S8e family protein
RAP-DB (Rice) LOC_Os07g47580.1 : ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a049127 , Zm00025a015413 , Zm00025a040686
Brachypodium KQK14693
Barley HORVU2Hr1G019660.8 , HORVU2Hr1G019660.9 , HORVU2Hr1G019660.2 , HORVU2Hr1G019660.3 , HORVU2Hr1G019660.1 , HORVU2Hr1G019660.6 , HORVU2Hr1G019660.7 , HORVU2Hr1G019660.4 , HORVU2Hr1G019660.5 , HORVU2Hr1G019660.10
Wheat TraesCS2B02G131900 , TraesCS2D02G113600 , TraesCS2A02G113100
Populus PNS98327 , PNS98328


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cDNA sequences
Sobic.002G413400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
2 Sobic.009G232000 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
3 Sobic.009G008600 REX1 DNA Repair family protein, expressed K10845: TTDA, GTF2H5, TFIIH basal transcription factor complex TTD-A subunit
4 Sobic.010G100000 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
5 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
6 Sobic.003G424800 MKI67 FHA domain-interacting nucleolar phosphoprotein(PubMedID : 24906815)@RNA recognition motif containing protein, putative, expressed K14838: nucleolar protein 15
7 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
8 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
9 Sobic.008G130400 prefoldin, putative, expressed -
10 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
11 Sobic.001G331900 expressed protein -
12 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
13 Sobic.001G467300 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
14 Sobic.010G238700 dynamin family protein, putative, expressed K12483: EH domain-containing protein 1
15 Sobic.010G046300 rRNA-processing protein FCF, putative, expressed K14566: UTP24, U3 small nucleolar RNA-associated protein 24
16 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20
17 Sobic.008G132800 expressed protein -
18 Sobic.005G027300 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
19 Sobic.006G220700 signal recognition particle 14 kDa protein, putative, expressed K03104: signal recognition particle subunit SRP14
20 Sobic.009G033000 expressed protein -


Gene co-expression network
sample Sobic002G413400 Sobic002G413400 Sobic001G402300 Sobic001G402300 Sobic002G413400--Sobic001G402300 Sobic009G232000 Sobic009G232000 Sobic002G413400--Sobic009G232000 Sobic009G008600 Sobic009G008600 Sobic002G413400--Sobic009G008600 Sobic010G100000 Sobic010G100000 Sobic002G413400--Sobic010G100000 Sobic006G222400 Sobic006G222400 Sobic002G413400--Sobic006G222400 Sobic003G424800 Sobic003G424800 Sobic002G413400--Sobic003G424800 Sobic001G126200 Sobic001G126200 Sobic002G413400--Sobic001G126200 Sobic001G513500 Sobic001G513500 Sobic002G413400--Sobic001G513500 Sobic008G130400 Sobic008G130400 Sobic002G413400--Sobic008G130400 Sobic008G137600 Sobic008G137600 Sobic001G402300--Sobic008G137600 Sobic001G226100 Sobic001G226100 Sobic001G402300--Sobic001G226100 Sobic004G141700 Sobic004G141700 Sobic001G402300--Sobic004G141700 Sobic010G251100 Sobic010G251100 Sobic001G402300--Sobic010G251100 Sobic007G118000 Sobic007G118000 Sobic001G402300--Sobic007G118000 Sobic009G232400 Sobic009G232400 Sobic001G402300--Sobic009G232400 Sobic001G402300--Sobic002G413400 Sobic001G529000 Sobic001G529000 Sobic001G402300--Sobic001G529000 Sobic001G285300 Sobic001G285300 Sobic001G402300--Sobic001G285300 Sobic001G018800 Sobic001G018800 Sobic009G232000--Sobic001G018800 Sobic001G011200 Sobic001G011200 Sobic009G232000--Sobic001G011200 Sobic009G232000--Sobic001G513500 Sobic001G436200 Sobic001G436200 Sobic009G232000--Sobic001G436200 Sobic002G056200 Sobic002G056200 Sobic009G232000--Sobic002G056200 Sobic001G377800 Sobic001G377800 Sobic009G232000--Sobic001G377800 Sobic009G232000--Sobic010G100000 Sobic003G321700 Sobic003G321700 Sobic009G232000--Sobic003G321700 Sobic006G213000 Sobic006G213000 Sobic009G232000--Sobic006G213000 Sobic005G157200 Sobic005G157200 Sobic009G008600--Sobic005G157200 Sobic010G213400 Sobic010G213400 Sobic009G008600--Sobic010G213400 Sobic001G331900 Sobic001G331900 Sobic009G008600--Sobic001G331900 Sobic008G132800 Sobic008G132800 Sobic009G008600--Sobic008G132800 Sobic009G008600--Sobic001G529000 Sobic003G362400 Sobic003G362400 Sobic009G008600--Sobic003G362400 Sobic009G008600--Sobic006G222400 Sobic002G263800 Sobic002G263800 Sobic009G008600--Sobic002G263800 Sobic010G008100 Sobic010G008100 Sobic009G008600--Sobic010G008100 Sobic010G100000--Sobic001G513500 Sobic010G100000--Sobic001G011200 Sobic005G050500 Sobic005G050500 Sobic010G100000--Sobic005G050500 Sobic010G100000--Sobic001G436200 Sobic003G280700 Sobic003G280700 Sobic010G100000--Sobic003G280700 Sobic001G481700 Sobic001G481700 Sobic010G100000--Sobic001G481700 Sobic005G091700 Sobic005G091700 Sobic010G100000--Sobic005G091700 Sobic010G100000--Sobic001G018800 Sobic002G406500 Sobic002G406500 Sobic010G100000--Sobic002G406500 Sobic010G238700 Sobic010G238700 Sobic006G222400--Sobic010G238700 Sobic006G222400--Sobic001G126200 Sobic003G217100 Sobic003G217100 Sobic006G222400--Sobic003G217100 Sobic006G222400--Sobic008G132800 Sobic006G222400--Sobic008G137600 Sobic002G428200 Sobic002G428200 Sobic006G222400--Sobic002G428200 Sobic001G105100 Sobic001G105100 Sobic006G222400--Sobic001G105100 Sobic004G224800 Sobic004G224800 Sobic006G222400--Sobic004G224800 Sobic010G017000 Sobic010G017000 Sobic006G222400--Sobic010G017000 Sobic001G117400 Sobic001G117400 Sobic003G424800--Sobic001G117400 Sobic002G116200 Sobic002G116200 Sobic003G424800--Sobic002G116200 Sobic003G424800--Sobic002G413400 Sobic001G147100 Sobic001G147100 Sobic003G424800--Sobic001G147100 Sobic003G424800--Sobic003G362400 Sobic003G424800--Sobic001G529000 Sobic003G424800--Sobic010G008100 Sobic003G424800--Sobic009G008600 Sobic003G424800--Sobic001G331900 Sobic001G126200--Sobic006G222400 Sobic001G126200--Sobic004G224800 Sobic006G094600 Sobic006G094600 Sobic001G126200--Sobic006G094600 Sobic003G131300 Sobic003G131300 Sobic001G126200--Sobic003G131300 Sobic001G126200--Sobic001G285300 Sobic001G126200--Sobic010G238700 Sobic001G367000 Sobic001G367000 Sobic001G126200--Sobic001G367000 Sobic002G044000 Sobic002G044000 Sobic001G126200--Sobic002G044000 Sobic007G192100 Sobic007G192100 Sobic001G126200--Sobic007G192100 Sobic001G513500--Sobic001G011200 Sobic001G513500--Sobic002G056200 Sobic003G129800 Sobic003G129800 Sobic001G513500--Sobic003G129800 Sobic001G513500--Sobic005G050500 Sobic001G334300 Sobic001G334300 Sobic001G513500--Sobic001G334300 Sobic009G179100 Sobic009G179100 Sobic001G513500--Sobic009G179100 Sobic004G310300 Sobic004G310300 Sobic001G513500--Sobic004G310300 Sobic001G513500--Sobic005G091700 Sobic001G513500--Sobic010G100000 Sobic008G130400--Sobic002G263800 Sobic008G130400--Sobic009G232000 Sobic008G132700 Sobic008G132700 Sobic008G130400--Sobic008G132700 Sobic008G130400--Sobic001G513500 Sobic001G418900 Sobic001G418900 Sobic008G130400--Sobic001G418900 Sobic001G483100 Sobic001G483100 Sobic008G130400--Sobic001G483100 Sobic008G130400--Sobic004G310300 Sobic006G138100 Sobic006G138100 Sobic008G130400--Sobic006G138100 Sobic004G224900 Sobic004G224900 Sobic008G130400--Sobic004G224900
Octagon: transcription factors


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