Gene annotation
Transcriptome id Sobic.001G402300.1
Synonym U2B\'\', Sb01g038060
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5WNF2
Pfam PF13893 PF00076
Panther DB PTHR10501
NCBI CDD KOG4206; Spliceosomal protein snRNP-U1A/U2B
KEGG Orthology K11094; U2 small nuclear ribonucleoprotein B''
Gene Ontology GO:0003676; nucleic acid binding GO:0017069snRNA binding GO:0000398mRNA splicing, via spliceosome


Orthologs (automatic annotation)
TAIR AT2G30260 : U2 small nuclear ribonucleoprotein B
RAP-DB (Rice) LOC_Os03g18720.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a052620 , Zm00025a002052
Brachypodium KQK22074
Barley HORVU4Hr1G055040.1
Wheat TraesCS4B02G188900 , TraesCS4D02G190200 , TraesCS4A02G115300
Populus PNT08478 , PNS91674 , PNS91696


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
2 Sobic.001G226100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
3 Sobic.004G141700 expressed protein -
4 Sobic.010G251100 - K03257: translation initiation factor 4A
5 Sobic.007G118000 double-stranded RNA binding motif containing protein, expressed -
6 Sobic.009G232400 expressed protein -
7 Sobic.002G413400 ribosomal protein, putative, expressed K14842: ribosome biogenesis protein NSA2
8 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
9 Sobic.001G285300 expressed protein -
10 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
11 Sobic.001G216200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
12 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
13 Sobic.007G203700 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
14 Sobic.001G467300 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
15 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
16 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
17 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
18 Sobic.003G021200 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
19 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
20 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31


Gene co-expression network
sample Sobic001G402300 Sobic001G402300 Sobic008G137600 Sobic008G137600 Sobic001G402300--Sobic008G137600 Sobic001G226100 Sobic001G226100 Sobic001G402300--Sobic001G226100 Sobic004G141700 Sobic004G141700 Sobic001G402300--Sobic004G141700 Sobic010G251100 Sobic010G251100 Sobic001G402300--Sobic010G251100 Sobic007G118000 Sobic007G118000 Sobic001G402300--Sobic007G118000 Sobic009G232400 Sobic009G232400 Sobic001G402300--Sobic009G232400 Sobic002G413400 Sobic002G413400 Sobic001G402300--Sobic002G413400 Sobic001G529000 Sobic001G529000 Sobic001G402300--Sobic001G529000 Sobic001G285300 Sobic001G285300 Sobic001G402300--Sobic001G285300 Sobic001G532100 Sobic001G532100 Sobic008G137600--Sobic001G532100 Sobic008G137600--Sobic001G402300 Sobic001G294900 Sobic001G294900 Sobic008G137600--Sobic001G294900 Sobic002G428200 Sobic002G428200 Sobic008G137600--Sobic002G428200 Sobic003G273400 Sobic003G273400 Sobic008G137600--Sobic003G273400 Sobic006G109700 Sobic006G109700 Sobic008G137600--Sobic006G109700 Sobic002G341800 Sobic002G341800 Sobic008G137600--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic008G137600--Sobic001G404100 Sobic001G502200 Sobic001G502200 Sobic008G137600--Sobic001G502200 Sobic001G226100--Sobic010G251100 Sobic001G226100--Sobic001G402300 Sobic001G226100--Sobic004G141700 Sobic001G226100--Sobic009G232400 Sobic002G306400 Sobic002G306400 Sobic001G226100--Sobic002G306400 Sobic001G226100--Sobic007G118000 Sobic006G252100 Sobic006G252100 Sobic001G226100--Sobic006G252100 Sobic001G512600 Sobic001G512600 Sobic001G226100--Sobic001G512600 Sobic001G054200 Sobic001G054200 Sobic001G226100--Sobic001G054200 Sobic004G141700--Sobic009G232400 Sobic001G007200 Sobic001G007200 Sobic004G141700--Sobic001G007200 Sobic010G193800 Sobic010G193800 Sobic004G141700--Sobic010G193800 Sobic004G141700--Sobic001G402300 Sobic004G141700--Sobic001G226100 Sobic004G141700--Sobic001G054200 Sobic010G018700 Sobic010G018700 Sobic004G141700--Sobic010G018700 Sobic010G083700 Sobic010G083700 Sobic004G141700--Sobic010G083700 Sobic001G439600 Sobic001G439600 Sobic004G141700--Sobic001G439600 Sobic010G251100--Sobic001G226100 Sobic010G251100--Sobic001G402300 Sobic003G226500 Sobic003G226500 Sobic010G251100--Sobic003G226500 Sobic010G251100--Sobic009G232400 Sobic007G205000 Sobic007G205000 Sobic010G251100--Sobic007G205000 Sobic008G004400 Sobic008G004400 Sobic010G251100--Sobic008G004400 Sobic006G278700 Sobic006G278700 Sobic010G251100--Sobic006G278700 Sobic010G012600 Sobic010G012600 Sobic010G251100--Sobic010G012600 Sobic010G251100--Sobic010G193800 Sobic007G045600 Sobic007G045600 Sobic007G118000--Sobic007G045600 Sobic001G033500 Sobic001G033500 Sobic007G118000--Sobic001G033500 Sobic007G118000--Sobic001G402300 Sobic003G374000 Sobic003G374000 Sobic007G118000--Sobic003G374000 Sobic004G072800 Sobic004G072800 Sobic007G118000--Sobic004G072800 Sobic002G281300 Sobic002G281300 Sobic007G118000--Sobic002G281300 Sobic001G067900 Sobic001G067900 Sobic007G118000--Sobic001G067900 Sobic007G118000--Sobic004G141700 Sobic001G323300 Sobic001G323300 Sobic007G118000--Sobic001G323300 Sobic009G232400--Sobic004G141700 Sobic009G232400--Sobic001G402300 Sobic003G350600 Sobic003G350600 Sobic009G232400--Sobic003G350600 Sobic009G232400--Sobic001G226100 Sobic009G232400--Sobic001G007200 Sobic009G232400--Sobic010G083700 Sobic009G232400--Sobic010G251100 Sobic009G232400--Sobic001G054200 Sobic009G232400--Sobic007G118000 Sobic002G413400--Sobic001G402300 Sobic009G232000 Sobic009G232000 Sobic002G413400--Sobic009G232000 Sobic009G008600 Sobic009G008600 Sobic002G413400--Sobic009G008600 Sobic010G100000 Sobic010G100000 Sobic002G413400--Sobic010G100000 Sobic006G222400 Sobic006G222400 Sobic002G413400--Sobic006G222400 Sobic003G424800 Sobic003G424800 Sobic002G413400--Sobic003G424800 Sobic001G126200 Sobic001G126200 Sobic002G413400--Sobic001G126200 Sobic001G513500 Sobic001G513500 Sobic002G413400--Sobic001G513500 Sobic008G130400 Sobic008G130400 Sobic002G413400--Sobic008G130400 Sobic003G362400 Sobic003G362400 Sobic001G529000--Sobic003G362400 Sobic004G248800 Sobic004G248800 Sobic001G529000--Sobic004G248800 Sobic003G124800 Sobic003G124800 Sobic001G529000--Sobic003G124800 Sobic001G331900 Sobic001G331900 Sobic001G529000--Sobic001G331900 Sobic005G157200 Sobic005G157200 Sobic001G529000--Sobic005G157200 Sobic007G163700 Sobic007G163700 Sobic001G529000--Sobic007G163700 Sobic010G039800 Sobic010G039800 Sobic001G529000--Sobic010G039800 Sobic007G203700 Sobic007G203700 Sobic001G529000--Sobic007G203700 Sobic004G300900 Sobic004G300900 Sobic001G529000--Sobic004G300900 Sobic008G111700 Sobic008G111700 Sobic001G285300--Sobic008G111700 Sobic001G285300--Sobic001G532100 Sobic006G143500 Sobic006G143500 Sobic001G285300--Sobic006G143500 Sobic002G044000 Sobic002G044000 Sobic001G285300--Sobic002G044000 Sobic001G036700 Sobic001G036700 Sobic001G285300--Sobic001G036700 Sobic001G285300--Sobic001G126200 Sobic003G420700 Sobic003G420700 Sobic001G285300--Sobic003G420700 Sobic001G285300--Sobic001G402300 Sobic006G094600 Sobic006G094600 Sobic001G285300--Sobic006G094600
Octagon: transcription factors


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