Gene annotation
Transcriptome id Sobic.001G502200.1
Synonym Sb01g046910, ATPAE1, PAE1
Functional annotation peptidase, T1 family, putative, expressed
UniProt A0A1Z5SBB8
Pfam PF10584 PF00227
Panther DB PTHR11599 PTHR11599:SF14
NCBI CDD KOG0176; 20S proteasome, regulatory subunit alpha type PSMA5/PUP2
KEGG Orthology K02729; 20S proteasome subunit alpha 5
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process GO:0004175endopeptidase activity GO:0005839proteasome core complex GO:0004298threonine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G53850 : 20S proteasome alpha subunit E1
RAP-DB (Rice) LOC_Os11g40140.1 : peptidase, T1 family, putative, expressed
MaizeGDB (Corn) Zm00025a053425 , Zm00025a029338 , Zm00025a000672
Brachypodium KQJ86675 , KQJ87824
Barley HORVU5Hr1G038710.1 , HORVU4Hr1G040770.4 , HORVU4Hr1G040770.5 , HORVU4Hr1G040770.6 , HORVU4Hr1G040770.7 , HORVU4Hr1G040770.1 , HORVU4Hr1G040770.2 , HORVU4Hr1G040770.3 , HORVU4Hr1G040770.8 , HORVU4Hr1G040770.9
Wheat TraesCS4B02G151700 , TraesCS5B02G114000 , TraesCS4A02G167300 , TraesCS4D02G157700
Populus -


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cDNA sequences
Sobic.001G502200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G315500 ethylene-responsive element-binding protein, putative, expressed -
2 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
3 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
4 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
5 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
6 Sobic.003G330500 peptidase, T1 family, putative, expressed -
7 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
8 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
9 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
10 Sobic.007G045600 MSP domain containing protein, expressed -
11 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
12 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
13 Sobic.010G065400 X0001, putative, expressed -
14 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
15 Sobic.001G428100 S-RNase-binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins
16 Sobic.010G205300 secreted salivary protein, putative, expressed -
17 Sobic.004G086600 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
18 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
19 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
20 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -


Gene co-expression network
sample Sobic001G502200 Sobic001G502200 Sobic001G315500 Sobic001G315500 Sobic001G502200--Sobic001G315500 Sobic007G168600 Sobic007G168600 Sobic001G502200--Sobic007G168600 Sobic004G224900 Sobic004G224900 Sobic001G502200--Sobic004G224900 Sobic003G124800 Sobic003G124800 Sobic001G502200--Sobic003G124800 Sobic001G458700 Sobic001G458700 Sobic001G502200--Sobic001G458700 Sobic003G330500 Sobic003G330500 Sobic001G502200--Sobic003G330500 Sobic002G428200 Sobic002G428200 Sobic001G502200--Sobic002G428200 Sobic002G078400 Sobic002G078400 Sobic001G502200--Sobic002G078400 Sobic006G252200 Sobic006G252200 Sobic001G502200--Sobic006G252200 Sobic001G315500--Sobic001G502200 Sobic001G315500--Sobic003G124800 Sobic010G065400 Sobic010G065400 Sobic001G315500--Sobic010G065400 Sobic008G137600 Sobic008G137600 Sobic001G315500--Sobic008G137600 Sobic001G315500--Sobic004G224900 Sobic001G315500--Sobic002G428200 Sobic001G315500--Sobic006G252200 Sobic001G315500--Sobic003G330500 Sobic003G362400 Sobic003G362400 Sobic001G315500--Sobic003G362400 Sobic002G400000 Sobic002G400000 Sobic007G168600--Sobic002G400000 Sobic009G198500 Sobic009G198500 Sobic007G168600--Sobic009G198500 Sobic004G086600 Sobic004G086600 Sobic007G168600--Sobic004G086600 Sobic007G168600--Sobic001G502200 Sobic003G077900 Sobic003G077900 Sobic007G168600--Sobic003G077900 Sobic010G205300 Sobic010G205300 Sobic007G168600--Sobic010G205300 Sobic007G168600--Sobic003G124800 Sobic001G461900 Sobic001G461900 Sobic007G168600--Sobic001G461900 Sobic001G314500 Sobic001G314500 Sobic007G168600--Sobic001G314500 Sobic004G224900--Sobic003G330500 Sobic004G224900--Sobic006G252200 Sobic007G176200 Sobic007G176200 Sobic004G224900--Sobic007G176200 Sobic004G138800 Sobic004G138800 Sobic004G224900--Sobic004G138800 Sobic007G076300 Sobic007G076300 Sobic004G224900--Sobic007G076300 Sobic001G481700 Sobic001G481700 Sobic004G224900--Sobic001G481700 Sobic004G224900--Sobic001G502200 Sobic004G224900--Sobic001G458700 Sobic001G236300 Sobic001G236300 Sobic004G224900--Sobic001G236300 Sobic003G124800--Sobic009G198500 Sobic001G439600 Sobic001G439600 Sobic003G124800--Sobic001G439600 Sobic006G232200 Sobic006G232200 Sobic003G124800--Sobic006G232200 Sobic003G124800--Sobic001G502200 Sobic007G045600 Sobic007G045600 Sobic003G124800--Sobic007G045600 Sobic001G529000 Sobic001G529000 Sobic003G124800--Sobic001G529000 Sobic003G124800--Sobic007G168600 Sobic006G150600 Sobic006G150600 Sobic003G124800--Sobic006G150600 Sobic004G066800 Sobic004G066800 Sobic003G124800--Sobic004G066800 Sobic001G458700--Sobic007G176200 Sobic001G458700--Sobic006G252200 Sobic001G010700 Sobic001G010700 Sobic001G458700--Sobic001G010700 Sobic002G341800 Sobic002G341800 Sobic001G458700--Sobic002G341800 Sobic001G458700--Sobic004G224900 Sobic001G458700--Sobic003G330500 Sobic001G283200 Sobic001G283200 Sobic001G458700--Sobic001G283200 Sobic001G458700--Sobic001G502200 Sobic004G081800 Sobic004G081800 Sobic001G458700--Sobic004G081800 Sobic003G330500--Sobic004G224900 Sobic003G330500--Sobic007G176200 Sobic003G330500--Sobic007G076300 Sobic003G330500--Sobic006G252200 Sobic003G330500--Sobic001G458700 Sobic003G330500--Sobic001G010700 Sobic003G330500--Sobic001G502200 Sobic003G330500--Sobic004G138800 Sobic001G096100 Sobic001G096100 Sobic003G330500--Sobic001G096100 Sobic004G335000 Sobic004G335000 Sobic002G428200--Sobic004G335000 Sobic002G428200--Sobic007G176200 Sobic006G211800 Sobic006G211800 Sobic002G428200--Sobic006G211800 Sobic002G428200--Sobic004G224900 Sobic002G428200--Sobic006G252200 Sobic002G428200--Sobic001G502200 Sobic002G428200--Sobic008G137600 Sobic002G428200--Sobic001G010700 Sobic003G104700 Sobic003G104700 Sobic002G428200--Sobic003G104700 Sobic004G300900 Sobic004G300900 Sobic002G078400--Sobic004G300900 Sobic002G078400--Sobic010G065400 Sobic002G078400--Sobic003G362400 Sobic007G091000 Sobic007G091000 Sobic002G078400--Sobic007G091000 Sobic008G132800 Sobic008G132800 Sobic002G078400--Sobic008G132800 Sobic001G445800 Sobic001G445800 Sobic002G078400--Sobic001G445800 Sobic001G331900 Sobic001G331900 Sobic002G078400--Sobic001G331900 Sobic002G078400--Sobic009G198500 Sobic010G029400 Sobic010G029400 Sobic002G078400--Sobic010G029400 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic006G252200--Sobic002G428200 Sobic006G252200--Sobic004G138800 Sobic006G252200--Sobic001G283200 Sobic006G252200--Sobic001G096100
Octagon: transcription factors


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