Gene annotation
Transcriptome id Sobic.001G428100.1,Sobic.001G428100.2
Synonym Sb01g040220, SBP1
Functional annotation S-RNase-binding protein, putative, expressed
UniProt C5WQ61 , A0A1Z5SAT7
Pfam PF13920
Panther DB PTHR10044 PTHR10044:SF118
NCBI CDD KOG1100; Predicted E3 ubiquitin ligase
KEGG Orthology K19042; E3 ubiquitin-protein ligase BOI and related proteins
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G45976 : S-ribonuclease binding protein 1
RAP-DB (Rice) LOC_Os03g15730.1 : S-RNase-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a001709 , Zm00025a052803
Brachypodium KQK22446
Barley HORVU4Hr1G061210.2 , HORVU4Hr1G061210.3 , HORVU4Hr1G061210.1
Wheat TraesCS4B02G215100 , TraesCS4B02G215100 , TraesCS4D02G215600 , TraesCS4D02G215600 , TraesCS4A02G089200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G281200 csAtPR5, putative, expressed -
2 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
3 Sobic.001G501200 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
4 Sobic.004G060600 expressed protein K13105: proline-rich protein PRCC
5 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
6 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
7 Sobic.003G440800 vacuolar protein sorting 55 family protein, putative, expressed -
8 Sobic.001G315500 ethylene-responsive element-binding protein, putative, expressed -
9 Sobic.003G117300 LSM domain containing protein, expressed K12623: U6 snRNA-associated Sm-like protein LSm4
10 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
11 Sobic.004G130100 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
12 Sobic.006G109700 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
13 Sobic.001G447900 OsFBO13 - F-box and other domain containing protein, expressed K10293: F-box protein 7
14 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
15 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
16 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
17 Sobic.005G033200 expressed protein -
18 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
19 Sobic.010G065400 X0001, putative, expressed -
20 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11


Gene co-expression network
sample Sobic001G428100 Sobic001G428100 Sobic006G281200 Sobic006G281200 Sobic001G428100--Sobic006G281200 Sobic001G502200 Sobic001G502200 Sobic001G428100--Sobic001G502200 Sobic001G501200 Sobic001G501200 Sobic001G428100--Sobic001G501200 Sobic004G060600 Sobic004G060600 Sobic001G428100--Sobic004G060600 Sobic009G198500 Sobic009G198500 Sobic001G428100--Sobic009G198500 Sobic009G004600 Sobic009G004600 Sobic001G428100--Sobic009G004600 Sobic003G440800 Sobic003G440800 Sobic001G428100--Sobic003G440800 Sobic001G315500 Sobic001G315500 Sobic001G428100--Sobic001G315500 Sobic003G117300 Sobic003G117300 Sobic001G428100--Sobic003G117300 Sobic006G281200--Sobic001G428100 Sobic003G003000 Sobic003G003000 Sobic006G281200--Sobic003G003000 Sobic001G025600 Sobic001G025600 Sobic006G281200--Sobic001G025600 Sobic009G131100 Sobic009G131100 Sobic006G281200--Sobic009G131100 Sobic007G091000 Sobic007G091000 Sobic006G281200--Sobic007G091000 Sobic001G404100 Sobic001G404100 Sobic006G281200--Sobic001G404100 Sobic008G100000 Sobic008G100000 Sobic006G281200--Sobic008G100000 Sobic003G367900 Sobic003G367900 Sobic006G281200--Sobic003G367900 Sobic009G130400 Sobic009G130400 Sobic006G281200--Sobic009G130400 Sobic001G502200--Sobic001G315500 Sobic007G168600 Sobic007G168600 Sobic001G502200--Sobic007G168600 Sobic004G224900 Sobic004G224900 Sobic001G502200--Sobic004G224900 Sobic003G124800 Sobic003G124800 Sobic001G502200--Sobic003G124800 Sobic001G458700 Sobic001G458700 Sobic001G502200--Sobic001G458700 Sobic003G330500 Sobic003G330500 Sobic001G502200--Sobic003G330500 Sobic002G428200 Sobic002G428200 Sobic001G502200--Sobic002G428200 Sobic002G078400 Sobic002G078400 Sobic001G502200--Sobic002G078400 Sobic006G252200 Sobic006G252200 Sobic001G502200--Sobic006G252200 Sobic001G501200--Sobic009G198500 Sobic007G096700 Sobic007G096700 Sobic001G501200--Sobic007G096700 Sobic001G005900 Sobic001G005900 Sobic001G501200--Sobic001G005900 Sobic001G501200--Sobic007G168600 Sobic001G501200--Sobic001G428100 Sobic001G501200--Sobic003G124800 Sobic001G501200--Sobic001G502200 Sobic004G300900 Sobic004G300900 Sobic001G501200--Sobic004G300900 Sobic004G130100 Sobic004G130100 Sobic001G501200--Sobic004G130100 Sobic003G077900 Sobic003G077900 Sobic004G060600--Sobic003G077900 Sobic002G400000 Sobic002G400000 Sobic004G060600--Sobic002G400000 Sobic004G060600--Sobic009G131100 Sobic004G060600--Sobic001G428100 Sobic007G203700 Sobic007G203700 Sobic004G060600--Sobic007G203700 Sobic004G060600--Sobic009G198500 Sobic004G060600--Sobic007G168600 Sobic004G060600--Sobic003G117300 Sobic001G364600 Sobic001G364600 Sobic004G060600--Sobic001G364600 Sobic004G272300 Sobic004G272300 Sobic009G198500--Sobic004G272300 Sobic009G198500--Sobic003G124800 Sobic009G198500--Sobic002G400000 Sobic009G198500--Sobic007G168600 Sobic009G198500--Sobic002G078400 Sobic009G198500--Sobic004G300900 Sobic009G198500--Sobic001G005900 Sobic009G198500--Sobic007G096700 Sobic006G212100 Sobic006G212100 Sobic009G198500--Sobic006G212100 Sobic009G004600--Sobic002G400000 Sobic004G356900 Sobic004G356900 Sobic009G004600--Sobic004G356900 Sobic003G217400 Sobic003G217400 Sobic009G004600--Sobic003G217400 Sobic009G004600--Sobic009G198500 Sobic001G263000 Sobic001G263000 Sobic009G004600--Sobic001G263000 Sobic001G314500 Sobic001G314500 Sobic009G004600--Sobic001G314500 Sobic002G113900 Sobic002G113900 Sobic009G004600--Sobic002G113900 Sobic010G205300 Sobic010G205300 Sobic009G004600--Sobic010G205300 Sobic009G004600--Sobic007G168600 Sobic003G440800--Sobic001G428100 Sobic003G440800--Sobic001G314500 Sobic003G440800--Sobic009G004600 Sobic003G440800--Sobic004G130100 Sobic003G440800--Sobic010G205300 Sobic003G386100 Sobic003G386100 Sobic003G440800--Sobic003G386100 Sobic003G440800--Sobic009G198500 Sobic003G440800--Sobic001G501200 Sobic005G033200 Sobic005G033200 Sobic003G440800--Sobic005G033200 Sobic001G315500--Sobic001G502200 Sobic001G315500--Sobic003G124800 Sobic010G065400 Sobic010G065400 Sobic001G315500--Sobic010G065400 Sobic008G137600 Sobic008G137600 Sobic001G315500--Sobic008G137600 Sobic001G315500--Sobic004G224900 Sobic001G315500--Sobic002G428200 Sobic001G315500--Sobic006G252200 Sobic001G315500--Sobic003G330500 Sobic003G362400 Sobic003G362400 Sobic001G315500--Sobic003G362400 Sobic003G117300--Sobic004G060600 Sobic003G117300--Sobic001G428100 Sobic002G071000 Sobic002G071000 Sobic003G117300--Sobic002G071000 Sobic003G117300--Sobic001G404100 Sobic002G262000 Sobic002G262000 Sobic003G117300--Sobic002G262000 Sobic003G117300--Sobic001G501200 Sobic003G117300--Sobic009G130400 Sobic003G117300--Sobic006G281200 Sobic003G117300--Sobic003G077900
Octagon: transcription factors


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