Gene annotation
Transcriptome id Sobic.003G117300.2
Synonym Sb03g009890, emb1644
Functional annotation LSM domain containing protein, expressed
UniProt C5XFV4
Pfam PF01423
Panther DB PTHR23338 PTHR23338:SF24
NCBI CDD KOG3482; Small nuclear ribonucleoprotein (snRNP) SMF KOG3448Predicted snRNP core protein
KEGG Orthology K12623; U6 snRNA-associated Sm-like protein LSm4
Gene Ontology GO:0006396; RNA processing


Orthologs (automatic annotation)
TAIR AT5G27720 : Small nuclear ribonucleoprotein family protein
RAP-DB (Rice) LOC_Os01g15310.1 : LSM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023959 , Zm00025a035315
Brachypodium KQK03686
Barley -
Wheat TraesCS3D02G181600 , TraesCS3A02G175900 , TraesCS3B02G205600 , TraesCS3B02G205600
Populus PNT50802 , PNT50801 , PNT50800


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cDNA sequences
Sobic.003G117300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G060600 expressed protein K13105: proline-rich protein PRCC
2 Sobic.001G428100 S-RNase-binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins
3 Sobic.002G071000 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
4 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
5 Sobic.002G262000 ankyrin repeat domain containing protein, putative, expressed -
6 Sobic.001G501200 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
7 Sobic.009G130400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7
8 Sobic.006G281200 csAtPR5, putative, expressed -
9 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
10 Sobic.006G109700 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
11 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
12 Sobic.002G035900 glycine-rich protein, putative, expressed K13344: peroxin-13
13 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
14 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
15 Sobic.003G369500 NPL4, putative, expressed K14015: NPLOC4, nuclear protein localization protein 4 homolog
16 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
17 Sobic.010G216200 OsGrx_C4 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
18 Sobic.001G417900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
19 Sobic.004G348900 expressed protein -
20 Sobic.001G428200 expressed protein -


Gene co-expression network
sample Sobic003G117300 Sobic003G117300 Sobic004G060600 Sobic004G060600 Sobic003G117300--Sobic004G060600 Sobic001G428100 Sobic001G428100 Sobic003G117300--Sobic001G428100 Sobic002G071000 Sobic002G071000 Sobic003G117300--Sobic002G071000 Sobic001G404100 Sobic001G404100 Sobic003G117300--Sobic001G404100 Sobic002G262000 Sobic002G262000 Sobic003G117300--Sobic002G262000 Sobic001G501200 Sobic001G501200 Sobic003G117300--Sobic001G501200 Sobic009G130400 Sobic009G130400 Sobic003G117300--Sobic009G130400 Sobic006G281200 Sobic006G281200 Sobic003G117300--Sobic006G281200 Sobic003G077900 Sobic003G077900 Sobic003G117300--Sobic003G077900 Sobic004G060600--Sobic003G077900 Sobic002G400000 Sobic002G400000 Sobic004G060600--Sobic002G400000 Sobic009G131100 Sobic009G131100 Sobic004G060600--Sobic009G131100 Sobic004G060600--Sobic001G428100 Sobic007G203700 Sobic007G203700 Sobic004G060600--Sobic007G203700 Sobic009G198500 Sobic009G198500 Sobic004G060600--Sobic009G198500 Sobic007G168600 Sobic007G168600 Sobic004G060600--Sobic007G168600 Sobic004G060600--Sobic003G117300 Sobic001G364600 Sobic001G364600 Sobic004G060600--Sobic001G364600 Sobic001G428100--Sobic006G281200 Sobic001G502200 Sobic001G502200 Sobic001G428100--Sobic001G502200 Sobic001G428100--Sobic001G501200 Sobic001G428100--Sobic004G060600 Sobic001G428100--Sobic009G198500 Sobic009G004600 Sobic009G004600 Sobic001G428100--Sobic009G004600 Sobic003G440800 Sobic003G440800 Sobic001G428100--Sobic003G440800 Sobic001G315500 Sobic001G315500 Sobic001G428100--Sobic001G315500 Sobic001G428100--Sobic003G117300 Sobic007G079300 Sobic007G079300 Sobic002G071000--Sobic007G079300 Sobic001G234200 Sobic001G234200 Sobic002G071000--Sobic001G234200 Sobic004G348900 Sobic004G348900 Sobic002G071000--Sobic004G348900 Sobic006G010000 Sobic006G010000 Sobic002G071000--Sobic006G010000 Sobic009G249100 Sobic009G249100 Sobic002G071000--Sobic009G249100 Sobic003G293300 Sobic003G293300 Sobic002G071000--Sobic003G293300 Sobic002G071000--Sobic003G117300 Sobic004G082900 Sobic004G082900 Sobic002G071000--Sobic004G082900 Sobic006G049700 Sobic006G049700 Sobic002G071000--Sobic006G049700 Sobic002G341800 Sobic002G341800 Sobic001G404100--Sobic002G341800 Sobic001G481700 Sobic001G481700 Sobic001G404100--Sobic001G481700 Sobic001G404100--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic001G404100--Sobic008G137600 Sobic009G104000 Sobic009G104000 Sobic001G404100--Sobic009G104000 Sobic001G096100 Sobic001G096100 Sobic001G404100--Sobic001G096100 Sobic002G428200 Sobic002G428200 Sobic001G404100--Sobic002G428200 Sobic009G212300 Sobic009G212300 Sobic001G404100--Sobic009G212300 Sobic006G252200 Sobic006G252200 Sobic001G404100--Sobic006G252200 Sobic004G356900 Sobic004G356900 Sobic002G262000--Sobic004G356900 Sobic002G262000--Sobic002G071000 Sobic002G262000--Sobic003G117300 Sobic010G108900 Sobic010G108900 Sobic002G262000--Sobic010G108900 Sobic002G262000--Sobic006G049700 Sobic002G262000--Sobic001G234200 Sobic006G183000 Sobic006G183000 Sobic002G262000--Sobic006G183000 Sobic004G232800 Sobic004G232800 Sobic002G262000--Sobic004G232800 Sobic002G262000--Sobic004G348900 Sobic001G501200--Sobic009G198500 Sobic007G096700 Sobic007G096700 Sobic001G501200--Sobic007G096700 Sobic001G005900 Sobic001G005900 Sobic001G501200--Sobic001G005900 Sobic001G501200--Sobic007G168600 Sobic001G501200--Sobic001G428100 Sobic003G124800 Sobic003G124800 Sobic001G501200--Sobic003G124800 Sobic001G501200--Sobic001G502200 Sobic004G300900 Sobic004G300900 Sobic001G501200--Sobic004G300900 Sobic004G130100 Sobic004G130100 Sobic001G501200--Sobic004G130100 Sobic009G130400--Sobic001G404100 Sobic009G130400--Sobic001G096100 Sobic009G130400--Sobic006G281200 Sobic008G058300 Sobic008G058300 Sobic009G130400--Sobic008G058300 Sobic010G013900 Sobic010G013900 Sobic009G130400--Sobic010G013900 Sobic003G028100 Sobic003G028100 Sobic009G130400--Sobic003G028100 Sobic009G130400--Sobic001G502200 Sobic009G130400--Sobic002G341800 Sobic004G248900 Sobic004G248900 Sobic009G130400--Sobic004G248900 Sobic006G281200--Sobic001G428100 Sobic003G003000 Sobic003G003000 Sobic006G281200--Sobic003G003000 Sobic001G025600 Sobic001G025600 Sobic006G281200--Sobic001G025600 Sobic006G281200--Sobic009G131100 Sobic007G091000 Sobic007G091000 Sobic006G281200--Sobic007G091000 Sobic006G281200--Sobic001G404100 Sobic008G100000 Sobic008G100000 Sobic006G281200--Sobic008G100000 Sobic003G367900 Sobic003G367900 Sobic006G281200--Sobic003G367900 Sobic006G281200--Sobic009G130400 Sobic003G077900--Sobic002G400000 Sobic003G077900--Sobic007G168600 Sobic003G217400 Sobic003G217400 Sobic003G077900--Sobic003G217400 Sobic010G188100 Sobic010G188100 Sobic003G077900--Sobic010G188100 Sobic003G077900--Sobic004G060600 Sobic001G220400 Sobic001G220400 Sobic003G077900--Sobic001G220400 Sobic003G077900--Sobic004G348900 Sobic009G219900 Sobic009G219900 Sobic003G077900--Sobic009G219900 Sobic004G130900 Sobic004G130900 Sobic003G077900--Sobic004G130900
Octagon: transcription factors


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