Gene annotation
Transcriptome id Sobic.003G369500.1
Synonym NPL41, Sb03g041070
Functional annotation NPL4, putative, expressed
UniProt C5XR81
Pfam PF05021
Panther DB PTHR12710
NCBI CDD KOG2834; Nuclear pore complex, rNpl4 component (sc Npl4)
KEGG Orthology K14015; NPLOC4, nuclear protein localization protein 4 homolog
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G63000 : NPL4-like protein 1
RAP-DB (Rice) LOC_Os01g27990.1 : NPL4, putative, expressed
MaizeGDB (Corn) Zm00025a039557 , Zm00025a026685
Brachypodium KQK04367
Barley HORVU2Hr1G085950.1 , HORVU2Hr1G085950.2 , HORVU5Hr1G116290.1
Wheat TraesCS6D02G123200 , TraesCS6B02G162100
Populus -


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cDNA sequences
Sobic.003G369500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G060600 expressed protein K13105: proline-rich protein PRCC
2 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
3 Sobic.009G131100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
4 Sobic.001G428200 expressed protein -
5 Sobic.007G091000 thioredoxin domain-containing protein 9, putative, expressed -
6 Sobic.001G428100 S-RNase-binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins
7 Sobic.007G044300 similar to Os08g0155400 protein(PubMedID : 29862293)@peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
8 Sobic.010G267500 bZIP orthologous(PubMedID : 28671251)@E2F-related protein, putative, expressed -
9 Sobic.003G277000 expressed protein -
10 Sobic.002G035900 glycine-rich protein, putative, expressed K13344: peroxin-13
11 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
12 Sobic.003G305100 expressed protein -
13 Sobic.001G533300 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
14 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
15 Sobic.001G450700 RHsf 8/ Hsf 3(PubMedID : 27006630)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
16 Sobic.007G196600 proteophosphoglycan ppg4, putative, expressed K13456: RPM1-interacting protein 4
17 Sobic.001G447900 OsFBO13 - F-box and other domain containing protein, expressed K10293: F-box protein 7
18 Sobic.003G402600 ubiquitin family domain containing protein, expressed K12160: SUMO, small ubiquitin-related modifier
19 Sobic.001G087900 expressed protein -
20 Sobic.004G331800 alginate regulatory protein AlgP, putative, expressed -


Gene co-expression network
sample Sobic003G369500 Sobic003G369500 Sobic004G060600 Sobic004G060600 Sobic003G369500--Sobic004G060600 Sobic003G077900 Sobic003G077900 Sobic003G369500--Sobic003G077900 Sobic009G131100 Sobic009G131100 Sobic003G369500--Sobic009G131100 Sobic001G428200 Sobic001G428200 Sobic003G369500--Sobic001G428200 Sobic007G091000 Sobic007G091000 Sobic003G369500--Sobic007G091000 Sobic001G428100 Sobic001G428100 Sobic003G369500--Sobic001G428100 Sobic007G044300 Sobic007G044300 Sobic003G369500--Sobic007G044300 Sobic010G267500 Sobic010G267500 Sobic003G369500--Sobic010G267500 Sobic003G277000 Sobic003G277000 Sobic003G369500--Sobic003G277000 Sobic004G060600--Sobic003G077900 Sobic002G400000 Sobic002G400000 Sobic004G060600--Sobic002G400000 Sobic004G060600--Sobic009G131100 Sobic004G060600--Sobic001G428100 Sobic007G203700 Sobic007G203700 Sobic004G060600--Sobic007G203700 Sobic009G198500 Sobic009G198500 Sobic004G060600--Sobic009G198500 Sobic007G168600 Sobic007G168600 Sobic004G060600--Sobic007G168600 Sobic003G117300 Sobic003G117300 Sobic004G060600--Sobic003G117300 Sobic001G364600 Sobic001G364600 Sobic004G060600--Sobic001G364600 Sobic003G077900--Sobic002G400000 Sobic003G077900--Sobic007G168600 Sobic003G217400 Sobic003G217400 Sobic003G077900--Sobic003G217400 Sobic010G188100 Sobic010G188100 Sobic003G077900--Sobic010G188100 Sobic003G077900--Sobic004G060600 Sobic001G220400 Sobic001G220400 Sobic003G077900--Sobic001G220400 Sobic004G348900 Sobic004G348900 Sobic003G077900--Sobic004G348900 Sobic009G219900 Sobic009G219900 Sobic003G077900--Sobic009G219900 Sobic004G130900 Sobic004G130900 Sobic003G077900--Sobic004G130900 Sobic001G536500 Sobic001G536500 Sobic009G131100--Sobic001G536500 Sobic002G078400 Sobic002G078400 Sobic009G131100--Sobic002G078400 Sobic009G131100--Sobic004G060600 Sobic009G131100--Sobic007G091000 Sobic010G194900 Sobic010G194900 Sobic009G131100--Sobic010G194900 Sobic009G131100--Sobic003G277000 Sobic001G087900 Sobic001G087900 Sobic009G131100--Sobic001G087900 Sobic004G265700 Sobic004G265700 Sobic009G131100--Sobic004G265700 Sobic006G281200 Sobic006G281200 Sobic009G131100--Sobic006G281200 Sobic001G428200--Sobic001G087900 Sobic004G351500 Sobic004G351500 Sobic001G428200--Sobic004G351500 Sobic001G428200--Sobic009G131100 Sobic001G428200--Sobic003G369500 Sobic001G353600 Sobic001G353600 Sobic001G428200--Sobic001G353600 Sobic003G325500 Sobic003G325500 Sobic001G428200--Sobic003G325500 Sobic004G225500 Sobic004G225500 Sobic001G428200--Sobic004G225500 Sobic001G428200--Sobic004G060600 Sobic001G428200--Sobic009G198500 Sobic007G091000--Sobic002G078400 Sobic003G362400 Sobic003G362400 Sobic007G091000--Sobic003G362400 Sobic001G128400 Sobic001G128400 Sobic007G091000--Sobic001G128400 Sobic005G111100 Sobic005G111100 Sobic007G091000--Sobic005G111100 Sobic007G152400 Sobic007G152400 Sobic007G091000--Sobic007G152400 Sobic003G305100 Sobic003G305100 Sobic007G091000--Sobic003G305100 Sobic003G368500 Sobic003G368500 Sobic007G091000--Sobic003G368500 Sobic001G025600 Sobic001G025600 Sobic007G091000--Sobic001G025600 Sobic007G091000--Sobic003G277000 Sobic001G428100--Sobic006G281200 Sobic001G502200 Sobic001G502200 Sobic001G428100--Sobic001G502200 Sobic001G501200 Sobic001G501200 Sobic001G428100--Sobic001G501200 Sobic001G428100--Sobic004G060600 Sobic001G428100--Sobic009G198500 Sobic009G004600 Sobic009G004600 Sobic001G428100--Sobic009G004600 Sobic003G440800 Sobic003G440800 Sobic001G428100--Sobic003G440800 Sobic001G315500 Sobic001G315500 Sobic001G428100--Sobic001G315500 Sobic001G428100--Sobic003G117300 Sobic001G343900 Sobic001G343900 Sobic007G044300--Sobic001G343900 Sobic007G196600 Sobic007G196600 Sobic007G044300--Sobic007G196600 Sobic007G044300--Sobic003G369500 Sobic007G006600 Sobic007G006600 Sobic007G044300--Sobic007G006600 Sobic001G162100 Sobic001G162100 Sobic007G044300--Sobic001G162100 Sobic001G410100 Sobic001G410100 Sobic007G044300--Sobic001G410100 Sobic006G265000 Sobic006G265000 Sobic007G044300--Sobic006G265000 Sobic001G216300 Sobic001G216300 Sobic007G044300--Sobic001G216300 Sobic002G333600 Sobic002G333600 Sobic007G044300--Sobic002G333600 Sobic006G207500 Sobic006G207500 Sobic010G267500--Sobic006G207500 Sobic010G267500--Sobic004G060600 Sobic007G097900 Sobic007G097900 Sobic010G267500--Sobic007G097900 Sobic010G267500--Sobic003G369500 Sobic003G402600 Sobic003G402600 Sobic010G267500--Sobic003G402600 Sobic007G226100 Sobic007G226100 Sobic010G267500--Sobic007G226100 Sobic003G361500 Sobic003G361500 Sobic010G267500--Sobic003G361500 Sobic004G001400 Sobic004G001400 Sobic010G267500--Sobic004G001400 Sobic008G137600 Sobic008G137600 Sobic010G267500--Sobic008G137600 Sobic003G277000--Sobic003G305100 Sobic003G277000--Sobic007G091000 Sobic003G277000--Sobic002G078400 Sobic001G538600 Sobic001G538600 Sobic003G277000--Sobic001G538600 Sobic003G277000--Sobic009G131100 Sobic001G533300 Sobic001G533300 Sobic003G277000--Sobic001G533300 Sobic002G222900 Sobic002G222900 Sobic003G277000--Sobic002G222900 Sobic001G286300 Sobic001G286300 Sobic003G277000--Sobic001G286300 Sobic009G168000 Sobic009G168000 Sobic003G277000--Sobic009G168000
Octagon: transcription factors


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