Gene annotation
Transcriptome id Sobic.003G402600.1
Synonym ATSUMO1, SUM1, Sb03g043870, SUMO1
Functional annotation ubiquitin family domain containing protein, expressed
UniProt C5XG88
Pfam PF11976
Panther DB PTHR10562 PTHR10562:SF26
NCBI CDD KOG1769; Ubiquitin-like proteins
KEGG Orthology K12160; SUMO, small ubiquitin-related modifier
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G26840 : small ubiquitin-like modifier 1
RAP-DB (Rice) LOC_Os01g68950.1 : ubiquitin family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a039335 , Zm00025a039332
Brachypodium -
Barley HORVU3Hr1G093620.4 , HORVU3Hr1G093620.1 , HORVU3Hr1G093620.3 , HORVU3Hr1G093620.2 , HORVU3Hr1G093710.1 , HORVU3Hr1G093710.3 , HORVU3Hr1G093710.2 , HORVU3Hr1G093710.4
Wheat TraesCS3B02G460000 , TraesCS3B02G460000 , TraesCS3A02G424000 , TraesCS3A02G424000 , TraesCS3D02G419300 , TraesCS3D02G419300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G402600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G011000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
2 Sobic.010G178800 solute carrier family 35 member B1, putative, expressed K15275: solute carrier family 35 (UDP-galactose transporter), member B1
3 Sobic.003G369500 NPL4, putative, expressed K14015: NPLOC4, nuclear protein localization protein 4 homolog
4 Sobic.010G267500 bZIP orthologous(PubMedID : 28671251)@E2F-related protein, putative, expressed -
5 Sobic.009G015700 actin-depolymerizing factor, putative, expressed K05765: cofilin
6 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
7 Sobic.004G012800 DNA-directed RNA polymerase II subunit RPB4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
8 Sobic.001G250300 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
9 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
10 Sobic.006G231500 acetyltransferase, GNAT family, putative, expressed K00670: NAA30, N-alpha-acetyltransferase 30
11 Sobic.006G207500 expressed protein -
12 Sobic.001G214200 lysM domain containing protein, putative, expressed -
13 Sobic.002G261900 arabinogalactan protein, putative, expressed -
14 Sobic.001G533300 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
15 Sobic.006G109700 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
16 Sobic.007G091000 thioredoxin domain-containing protein 9, putative, expressed -
17 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
18 Sobic.001G408100 Yip1 domain containing protein, expressed -
19 Sobic.009G150700 expressed protein -
20 Sobic.009G171100 prenylated rab acceptor, putative, expressed -


Gene co-expression network
sample Sobic003G402600 Sobic003G402600 Sobic006G011000 Sobic006G011000 Sobic003G402600--Sobic006G011000 Sobic010G178800 Sobic010G178800 Sobic003G402600--Sobic010G178800 Sobic003G369500 Sobic003G369500 Sobic003G402600--Sobic003G369500 Sobic010G267500 Sobic010G267500 Sobic003G402600--Sobic010G267500 Sobic009G015700 Sobic009G015700 Sobic003G402600--Sobic009G015700 Sobic006G211800 Sobic006G211800 Sobic003G402600--Sobic006G211800 Sobic004G012800 Sobic004G012800 Sobic003G402600--Sobic004G012800 Sobic001G250300 Sobic001G250300 Sobic003G402600--Sobic001G250300 Sobic002G428200 Sobic002G428200 Sobic003G402600--Sobic002G428200 Sobic006G094600 Sobic006G094600 Sobic006G011000--Sobic006G094600 Sobic001G329300 Sobic001G329300 Sobic006G011000--Sobic001G329300 Sobic002G204000 Sobic002G204000 Sobic006G011000--Sobic002G204000 Sobic008G137600 Sobic008G137600 Sobic006G011000--Sobic008G137600 Sobic001G147100 Sobic001G147100 Sobic006G011000--Sobic001G147100 Sobic006G109700 Sobic006G109700 Sobic006G011000--Sobic006G109700 Sobic001G532100 Sobic001G532100 Sobic006G011000--Sobic001G532100 Sobic010G163100 Sobic010G163100 Sobic006G011000--Sobic010G163100 Sobic006G011000--Sobic003G402600 Sobic010G178800--Sobic003G402600 Sobic009G171100 Sobic009G171100 Sobic010G178800--Sobic009G171100 Sobic001G408100 Sobic001G408100 Sobic010G178800--Sobic001G408100 Sobic004G323600 Sobic004G323600 Sobic010G178800--Sobic004G323600 Sobic005G184200 Sobic005G184200 Sobic010G178800--Sobic005G184200 Sobic009G050000 Sobic009G050000 Sobic010G178800--Sobic009G050000 Sobic004G025300 Sobic004G025300 Sobic010G178800--Sobic004G025300 Sobic001G441000 Sobic001G441000 Sobic010G178800--Sobic001G441000 Sobic003G253500 Sobic003G253500 Sobic010G178800--Sobic003G253500 Sobic004G060600 Sobic004G060600 Sobic003G369500--Sobic004G060600 Sobic003G077900 Sobic003G077900 Sobic003G369500--Sobic003G077900 Sobic009G131100 Sobic009G131100 Sobic003G369500--Sobic009G131100 Sobic001G428200 Sobic001G428200 Sobic003G369500--Sobic001G428200 Sobic007G091000 Sobic007G091000 Sobic003G369500--Sobic007G091000 Sobic001G428100 Sobic001G428100 Sobic003G369500--Sobic001G428100 Sobic007G044300 Sobic007G044300 Sobic003G369500--Sobic007G044300 Sobic003G369500--Sobic010G267500 Sobic003G277000 Sobic003G277000 Sobic003G369500--Sobic003G277000 Sobic006G207500 Sobic006G207500 Sobic010G267500--Sobic006G207500 Sobic010G267500--Sobic004G060600 Sobic007G097900 Sobic007G097900 Sobic010G267500--Sobic007G097900 Sobic010G267500--Sobic003G369500 Sobic010G267500--Sobic003G402600 Sobic007G226100 Sobic007G226100 Sobic010G267500--Sobic007G226100 Sobic003G361500 Sobic003G361500 Sobic010G267500--Sobic003G361500 Sobic004G001400 Sobic004G001400 Sobic010G267500--Sobic004G001400 Sobic010G267500--Sobic008G137600 Sobic009G017800 Sobic009G017800 Sobic009G015700--Sobic009G017800 Sobic007G122200 Sobic007G122200 Sobic009G015700--Sobic007G122200 Sobic009G015700--Sobic003G402600 Sobic001G407600 Sobic001G407600 Sobic009G015700--Sobic001G407600 Sobic001G526600 Sobic001G526600 Sobic009G015700--Sobic001G526600 Sobic005G026100 Sobic005G026100 Sobic009G015700--Sobic005G026100 Sobic003G238000 Sobic003G238000 Sobic009G015700--Sobic003G238000 Sobic002G291200 Sobic002G291200 Sobic009G015700--Sobic002G291200 Sobic002G363100 Sobic002G363100 Sobic009G015700--Sobic002G363100 Sobic006G211800--Sobic002G428200 Sobic007G176200 Sobic007G176200 Sobic006G211800--Sobic007G176200 Sobic002G423800 Sobic002G423800 Sobic006G211800--Sobic002G423800 Sobic006G252200 Sobic006G252200 Sobic006G211800--Sobic006G252200 Sobic005G105500 Sobic005G105500 Sobic006G211800--Sobic005G105500 Sobic009G234400 Sobic009G234400 Sobic006G211800--Sobic009G234400 Sobic001G444300 Sobic001G444300 Sobic006G211800--Sobic001G444300 Sobic001G404100 Sobic001G404100 Sobic006G211800--Sobic001G404100 Sobic009G212300 Sobic009G212300 Sobic006G211800--Sobic009G212300 Sobic004G137900 Sobic004G137900 Sobic004G012800--Sobic004G137900 Sobic006G231500 Sobic006G231500 Sobic004G012800--Sobic006G231500 Sobic006G231700 Sobic006G231700 Sobic004G012800--Sobic006G231700 Sobic009G001900 Sobic009G001900 Sobic004G012800--Sobic009G001900 Sobic002G254650 Sobic002G254650 Sobic004G012800--Sobic002G254650 Sobic005G111100 Sobic005G111100 Sobic004G012800--Sobic005G111100 Sobic003G358300 Sobic003G358300 Sobic004G012800--Sobic003G358300 Sobic004G012800--Sobic006G094600 Sobic004G012800--Sobic001G532100 Sobic001G250300--Sobic009G001900 Sobic003G322300 Sobic003G322300 Sobic001G250300--Sobic003G322300 Sobic010G258000 Sobic010G258000 Sobic001G250300--Sobic010G258000 Sobic007G220900 Sobic007G220900 Sobic001G250300--Sobic007G220900 Sobic006G203900 Sobic006G203900 Sobic001G250300--Sobic006G203900 Sobic001G250300--Sobic006G094600 Sobic001G250300--Sobic006G211800 Sobic003G131300 Sobic003G131300 Sobic001G250300--Sobic003G131300 Sobic001G250300--Sobic002G428200 Sobic004G335000 Sobic004G335000 Sobic002G428200--Sobic004G335000 Sobic002G428200--Sobic007G176200 Sobic002G428200--Sobic006G211800 Sobic004G224900 Sobic004G224900 Sobic002G428200--Sobic004G224900 Sobic002G428200--Sobic006G252200 Sobic001G502200 Sobic001G502200 Sobic002G428200--Sobic001G502200 Sobic002G428200--Sobic008G137600 Sobic001G010700 Sobic001G010700 Sobic002G428200--Sobic001G010700 Sobic003G104700 Sobic003G104700 Sobic002G428200--Sobic003G104700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.