Gene annotation
Transcriptome id Sobic.001G408100.2
Synonym Sb01g038550
Functional annotation Yip1 domain containing protein, expressed
UniProt A0A1B6QNW1
Pfam PF04893
Panther DB PTHR21236 PTHR21236:SF8
NCBI CDD KOG3103; Rab GTPase interacting factor, Golgi membrane protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT3G52760 : Integral membrane Yip1 family protein
RAP-DB (Rice) LOC_Os03g17990.1 : Yip1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a001972 , Zm00025a052681
Brachypodium -
Barley HORVU7Hr1G117310.1 , HORVU5Hr1G059740.1 , HORVU4Hr1G056600.1 , HORVU7Hr1G117260.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G217100 Yip1 domain containing protein, expressed -
2 Sobic.003G052400 proline-rich family protein, putative, expressed -
3 Sobic.009G171100 prenylated rab acceptor, putative, expressed -
4 Sobic.010G017000 RNA recognition motif containing protein, putative, expressed -
5 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
6 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
7 Sobic.001G214200 lysM domain containing protein, putative, expressed -
8 Sobic.004G025300 vesicle transport v-SNARE protein, putative, expressed K08495: GOSR1, golgi SNAP receptor complex member 1
9 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
10 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
11 Sobic.009G160200 prenylated rab acceptor, putative, expressed -
12 Sobic.001G441000 erwinia induced protein 2, putative, expressed -
13 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
14 Sobic.002G395600 bZIP transcription factor domain containing protein, expressed -
15 Sobic.002G261900 arabinogalactan protein, putative, expressed -
16 Sobic.002G090700 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
17 Sobic.001G311100 ubiquitin family protein, putative, expressed K04523: UBQLN, ubiquilin
18 Sobic.004G026200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.003G104700 Rer1 protein, putative, expressed -
20 Sobic.001G392800 NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed K03949: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5


Gene co-expression network
sample Sobic001G408100 Sobic001G408100 Sobic003G217100 Sobic003G217100 Sobic001G408100--Sobic003G217100 Sobic003G052400 Sobic003G052400 Sobic001G408100--Sobic003G052400 Sobic009G171100 Sobic009G171100 Sobic001G408100--Sobic009G171100 Sobic010G017000 Sobic010G017000 Sobic001G408100--Sobic010G017000 Sobic003G043400 Sobic003G043400 Sobic001G408100--Sobic003G043400 Sobic006G222400 Sobic006G222400 Sobic001G408100--Sobic006G222400 Sobic001G214200 Sobic001G214200 Sobic001G408100--Sobic001G214200 Sobic004G025300 Sobic004G025300 Sobic001G408100--Sobic004G025300 Sobic003G038600 Sobic003G038600 Sobic001G408100--Sobic003G038600 Sobic001G105100 Sobic001G105100 Sobic003G217100--Sobic001G105100 Sobic002G090700 Sobic002G090700 Sobic003G217100--Sobic002G090700 Sobic008G132800 Sobic008G132800 Sobic003G217100--Sobic008G132800 Sobic003G217100--Sobic006G222400 Sobic001G309500 Sobic001G309500 Sobic003G217100--Sobic001G309500 Sobic001G067900 Sobic001G067900 Sobic003G217100--Sobic001G067900 Sobic005G184200 Sobic005G184200 Sobic003G217100--Sobic005G184200 Sobic001G237500 Sobic001G237500 Sobic003G217100--Sobic001G237500 Sobic003G217100--Sobic001G408100 Sobic003G052400--Sobic010G017000 Sobic003G052400--Sobic001G408100 Sobic002G348600 Sobic002G348600 Sobic003G052400--Sobic002G348600 Sobic003G052400--Sobic001G067900 Sobic008G003600 Sobic008G003600 Sobic003G052400--Sobic008G003600 Sobic003G052400--Sobic003G217100 Sobic009G160200 Sobic009G160200 Sobic003G052400--Sobic009G160200 Sobic006G257001 Sobic006G257001 Sobic003G052400--Sobic006G257001 Sobic003G052400--Sobic001G237500 Sobic001G525400 Sobic001G525400 Sobic009G171100--Sobic001G525400 Sobic001G441000 Sobic001G441000 Sobic009G171100--Sobic001G441000 Sobic003G253500 Sobic003G253500 Sobic009G171100--Sobic003G253500 Sobic004G259500 Sobic004G259500 Sobic009G171100--Sobic004G259500 Sobic009G171100--Sobic001G408100 Sobic007G188100 Sobic007G188100 Sobic009G171100--Sobic007G188100 Sobic002G353400 Sobic002G353400 Sobic009G171100--Sobic002G353400 Sobic003G392200 Sobic003G392200 Sobic009G171100--Sobic003G392200 Sobic009G182200 Sobic009G182200 Sobic009G171100--Sobic009G182200 Sobic010G017000--Sobic006G222400 Sobic006G217700 Sobic006G217700 Sobic010G017000--Sobic006G217700 Sobic003G021200 Sobic003G021200 Sobic010G017000--Sobic003G021200 Sobic010G017000--Sobic003G052400 Sobic010G017000--Sobic009G160200 Sobic010G017000--Sobic003G038600 Sobic007G059900 Sobic007G059900 Sobic010G017000--Sobic007G059900 Sobic001G283500 Sobic001G283500 Sobic010G017000--Sobic001G283500 Sobic009G008600 Sobic009G008600 Sobic010G017000--Sobic009G008600 Sobic002G423800 Sobic002G423800 Sobic003G043400--Sobic002G423800 Sobic001G010700 Sobic001G010700 Sobic003G043400--Sobic001G010700 Sobic002G428200 Sobic002G428200 Sobic003G043400--Sobic002G428200 Sobic008G137600 Sobic008G137600 Sobic003G043400--Sobic008G137600 Sobic002G261900 Sobic002G261900 Sobic003G043400--Sobic002G261900 Sobic001G532100 Sobic001G532100 Sobic003G043400--Sobic001G532100 Sobic004G335000 Sobic004G335000 Sobic003G043400--Sobic004G335000 Sobic007G152400 Sobic007G152400 Sobic003G043400--Sobic007G152400 Sobic003G043400--Sobic006G222400 Sobic010G238700 Sobic010G238700 Sobic006G222400--Sobic010G238700 Sobic001G126200 Sobic001G126200 Sobic006G222400--Sobic001G126200 Sobic006G222400--Sobic003G217100 Sobic006G222400--Sobic008G132800 Sobic006G222400--Sobic008G137600 Sobic006G222400--Sobic002G428200 Sobic006G222400--Sobic001G105100 Sobic004G224800 Sobic004G224800 Sobic006G222400--Sobic004G224800 Sobic006G222400--Sobic010G017000 Sobic010G026700 Sobic010G026700 Sobic001G214200--Sobic010G026700 Sobic001G122500 Sobic001G122500 Sobic001G214200--Sobic001G122500 Sobic001G050400 Sobic001G050400 Sobic001G214200--Sobic001G050400 Sobic003G023500 Sobic003G023500 Sobic001G214200--Sobic003G023500 Sobic002G395600 Sobic002G395600 Sobic001G214200--Sobic002G395600 Sobic001G214200--Sobic001G408100 Sobic001G214200--Sobic010G017000 Sobic002G214900 Sobic002G214900 Sobic001G214200--Sobic002G214900 Sobic010G235200 Sobic010G235200 Sobic001G214200--Sobic010G235200 Sobic001G332300 Sobic001G332300 Sobic004G025300--Sobic001G332300 Sobic004G025300--Sobic005G184200 Sobic004G207900 Sobic004G207900 Sobic004G025300--Sobic004G207900 Sobic008G110500 Sobic008G110500 Sobic004G025300--Sobic008G110500 Sobic001G378200 Sobic001G378200 Sobic004G025300--Sobic001G378200 Sobic006G083100 Sobic006G083100 Sobic004G025300--Sobic006G083100 Sobic001G451901 Sobic001G451901 Sobic004G025300--Sobic001G451901 Sobic005G207400 Sobic005G207400 Sobic004G025300--Sobic005G207400 Sobic004G025300--Sobic001G408100 Sobic008G111700 Sobic008G111700 Sobic003G038600--Sobic008G111700 Sobic007G111100 Sobic007G111100 Sobic003G038600--Sobic007G111100 Sobic003G038600--Sobic010G017000 Sobic002G272600 Sobic002G272600 Sobic003G038600--Sobic002G272600 Sobic006G002500 Sobic006G002500 Sobic003G038600--Sobic006G002500 Sobic009G258400 Sobic009G258400 Sobic003G038600--Sobic009G258400 Sobic003G247900 Sobic003G247900 Sobic003G038600--Sobic003G247900 Sobic003G005200 Sobic003G005200 Sobic003G038600--Sobic003G005200 Sobic003G038600--Sobic010G235200
Octagon: transcription factors


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