Gene annotation
Transcriptome id Sobic.001G392800.1
Synonym Sb01g037220
Functional annotation NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed
UniProt C5WME2
Pfam PF04716
Panther DB PTHR12653
NCBI CDD KOG3365; NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit
KEGG Orthology K03949; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5
Gene Ontology GO:0005743; mitochondrial inner membrane GO:0016651oxidoreductase activity, acting on NAD(P)H


Orthologs (automatic annotation)
TAIR AT5G52840 : NADH-ubiquinone oxidoreductase-related
RAP-DB (Rice) LOC_Os03g19890.1 : NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed
MaizeGDB (Corn) Zm00025a052536 , Zm00025a002200
Brachypodium KQK21963
Barley HORVU4Hr1G052900.5 , HORVU4Hr1G052900.6 , HORVU4Hr1G052900.7 , HORVU4Hr1G052900.1 , HORVU4Hr1G052900.2 , HORVU4Hr1G052900.3 , HORVU4Hr1G052890.2 , HORVU4Hr1G052890.1
Wheat TraesCS4D02G182200 , TraesCS4B02G180700 , TraesCS4A02G123600
Populus -


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cDNA sequences
Sobic.001G392800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G262200 expressed protein -
2 Sobic.003G217100 Yip1 domain containing protein, expressed -
3 Sobic.002G090700 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
4 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
5 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
6 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
7 Sobic.009G001900 expressed protein -
8 Sobic.009G112900 expressed protein K18170: LYRM7, complex III assembly factor LYRM7
9 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
10 Sobic.001G216701 - -
11 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
12 Sobic.008G132800 expressed protein -
13 Sobic.007G019501 - K13448: calcium-binding protein CML
14 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -
15 Sobic.004G164000 glycosyltransferase, putative, expressed K08238: xyloglucan 6-xylosyltransferase
16 Sobic.005G027300 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
17 Sobic.003G224300 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
18 Sobic.009G045800 bifunctional protein folD, putative, expressed -
19 Sobic.010G038700 expressed protein -
20 Sobic.004G032000 peptidase, T1 family, putative, expressed K02725: 20S proteasome subunit alpha 6


Gene co-expression network
sample Sobic001G392800 Sobic001G392800 Sobic002G262200 Sobic002G262200 Sobic001G392800--Sobic002G262200 Sobic003G217100 Sobic003G217100 Sobic001G392800--Sobic003G217100 Sobic002G090700 Sobic002G090700 Sobic001G392800--Sobic002G090700 Sobic001G035400 Sobic001G035400 Sobic001G392800--Sobic001G035400 Sobic004G159000 Sobic004G159000 Sobic001G392800--Sobic004G159000 Sobic004G344800 Sobic004G344800 Sobic001G392800--Sobic004G344800 Sobic009G001900 Sobic009G001900 Sobic001G392800--Sobic009G001900 Sobic009G112900 Sobic009G112900 Sobic001G392800--Sobic009G112900 Sobic004G066800 Sobic004G066800 Sobic001G392800--Sobic004G066800 Sobic002G262200--Sobic004G159000 Sobic009G224400 Sobic009G224400 Sobic002G262200--Sobic009G224400 Sobic002G395000 Sobic002G395000 Sobic002G262200--Sobic002G395000 Sobic003G135600 Sobic003G135600 Sobic002G262200--Sobic003G135600 Sobic002G262200--Sobic004G344800 Sobic001G073600 Sobic001G073600 Sobic002G262200--Sobic001G073600 Sobic001G112400 Sobic001G112400 Sobic002G262200--Sobic001G112400 Sobic007G013900 Sobic007G013900 Sobic002G262200--Sobic007G013900 Sobic009G191400 Sobic009G191400 Sobic002G262200--Sobic009G191400 Sobic001G105100 Sobic001G105100 Sobic003G217100--Sobic001G105100 Sobic003G217100--Sobic002G090700 Sobic008G132800 Sobic008G132800 Sobic003G217100--Sobic008G132800 Sobic006G222400 Sobic006G222400 Sobic003G217100--Sobic006G222400 Sobic001G309500 Sobic001G309500 Sobic003G217100--Sobic001G309500 Sobic001G067900 Sobic001G067900 Sobic003G217100--Sobic001G067900 Sobic005G184200 Sobic005G184200 Sobic003G217100--Sobic005G184200 Sobic001G237500 Sobic001G237500 Sobic003G217100--Sobic001G237500 Sobic001G408100 Sobic001G408100 Sobic003G217100--Sobic001G408100 Sobic003G116600 Sobic003G116600 Sobic002G090700--Sobic003G116600 Sobic010G007400 Sobic010G007400 Sobic002G090700--Sobic010G007400 Sobic002G090700--Sobic003G217100 Sobic002G090700--Sobic004G159000 Sobic003G152900 Sobic003G152900 Sobic002G090700--Sobic003G152900 Sobic002G090700--Sobic004G066800 Sobic002G090700--Sobic001G309500 Sobic002G078400 Sobic002G078400 Sobic002G090700--Sobic002G078400 Sobic001G031900 Sobic001G031900 Sobic002G090700--Sobic001G031900 Sobic001G035400--Sobic004G344800 Sobic006G203900 Sobic006G203900 Sobic001G035400--Sobic006G203900 Sobic008G084100 Sobic008G084100 Sobic001G035400--Sobic008G084100 Sobic007G092100 Sobic007G092100 Sobic001G035400--Sobic007G092100 Sobic009G164700 Sobic009G164700 Sobic001G035400--Sobic009G164700 Sobic002G087000 Sobic002G087000 Sobic001G035400--Sobic002G087000 Sobic001G035400--Sobic001G073600 Sobic001G443200 Sobic001G443200 Sobic001G035400--Sobic001G443200 Sobic001G116000 Sobic001G116000 Sobic001G035400--Sobic001G116000 Sobic004G159000--Sobic007G013900 Sobic004G159000--Sobic004G344800 Sobic004G159000--Sobic002G262200 Sobic004G030000 Sobic004G030000 Sobic004G159000--Sobic004G030000 Sobic003G196600 Sobic003G196600 Sobic004G159000--Sobic003G196600 Sobic004G159000--Sobic002G090700 Sobic004G159000--Sobic003G152900 Sobic002G260200 Sobic002G260200 Sobic004G159000--Sobic002G260200 Sobic004G159000--Sobic010G007400 Sobic004G344800--Sobic001G073600 Sobic004G344800--Sobic003G135600 Sobic004G344800--Sobic004G159000 Sobic004G344800--Sobic001G035400 Sobic004G344800--Sobic009G191400 Sobic004G344800--Sobic004G030000 Sobic004G344800--Sobic002G262200 Sobic002G396700 Sobic002G396700 Sobic004G344800--Sobic002G396700 Sobic004G344800--Sobic001G031900 Sobic002G296200 Sobic002G296200 Sobic009G001900--Sobic002G296200 Sobic008G136800 Sobic008G136800 Sobic009G001900--Sobic008G136800 Sobic009G001900--Sobic004G066800 Sobic009G001900--Sobic006G203900 Sobic003G322300 Sobic003G322300 Sobic009G001900--Sobic003G322300 Sobic004G164000 Sobic004G164000 Sobic009G001900--Sobic004G164000 Sobic006G231500 Sobic006G231500 Sobic009G001900--Sobic006G231500 Sobic004G260200 Sobic004G260200 Sobic009G001900--Sobic004G260200 Sobic002G309700 Sobic002G309700 Sobic009G001900--Sobic002G309700 Sobic008G102600 Sobic008G102600 Sobic009G112900--Sobic008G102600 Sobic001G518500 Sobic001G518500 Sobic009G112900--Sobic001G518500 Sobic001G060300 Sobic001G060300 Sobic009G112900--Sobic001G060300 Sobic009G112900--Sobic002G262200 Sobic008G175100 Sobic008G175100 Sobic009G112900--Sobic008G175100 Sobic009G112900--Sobic004G159000 Sobic009G112900--Sobic003G196600 Sobic001G342200 Sobic001G342200 Sobic009G112900--Sobic001G342200 Sobic009G112900--Sobic010G007400 Sobic003G129800 Sobic003G129800 Sobic004G066800--Sobic003G129800 Sobic004G310300 Sobic004G310300 Sobic004G066800--Sobic004G310300 Sobic001G483100 Sobic001G483100 Sobic004G066800--Sobic001G483100 Sobic004G066800--Sobic007G092100 Sobic010G154700 Sobic010G154700 Sobic004G066800--Sobic010G154700 Sobic005G111100 Sobic005G111100 Sobic004G066800--Sobic005G111100 Sobic001G513500 Sobic001G513500 Sobic004G066800--Sobic001G513500 Sobic003G155400 Sobic003G155400 Sobic004G066800--Sobic003G155400 Sobic009G191200 Sobic009G191200 Sobic004G066800--Sobic009G191200
Octagon: transcription factors


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