Gene annotation
Transcriptome id Sobic.001G035400.1
Synonym Sb01g003310
Functional annotation ras-related protein, putative, expressed
UniProt C5WV20
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF561
NCBI CDD KOG0078; GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins
KEGG Orthology K07901; RAB8A, Ras-related protein Rab-8A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT5G59840 : Ras-related small GTP-binding family protein
RAP-DB (Rice) LOC_Os03g60530.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a028771 , Zm00025a002861 , Zm00025a008794 , Zm00025a016438 , Zm00025a032727 , Zm00025a050708
Brachypodium PNT76789 , KQK12450
Barley HORVU7Hr1G021170.1 , HORVU2Hr1G064310.1 , HORVU5Hr1G112790.9 , HORVU5Hr1G112790.8 , HORVU5Hr1G112790.7 , HORVU5Hr1G112790.6 , HORVU5Hr1G112790.5 , HORVU5Hr1G112790.4 , HORVU5Hr1G112790.3 , HORVU5Hr1G112790.2
Wheat TraesCS5A02G476400 , TraesCS5D02G489700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G035400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
2 Sobic.006G203900 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
3 Sobic.008G084100 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
4 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
5 Sobic.009G164700 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
6 Sobic.002G087000 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2
7 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
8 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
9 Sobic.001G116000 dynamin family protein, putative, expressed K01528: dynamin 1/3
10 Sobic.007G048700 stomatin-like protein 2, putative, expressed -
11 Sobic.001G196100 src homology-3 domain protein 3, putative, expressed -
12 Sobic.010G258000 peptidyl-prolyl cis-trans isomerase, putative, expressed K01802: peptidylprolyl isomerase
13 Sobic.010G277000 exosome complex exonuclease, putative, expressed K12589: RRP42, exosome complex component RRP42
14 Sobic.001G392800 NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed K03949: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5
15 Sobic.004G347600 vacuolar ATP synthase subunit H, putative, expressed K02144: V-type H+-transporting ATPase subunit H
16 Sobic.001G013200 actin-related protein 2/3 complex subunit 4, putative, expressed K05755: actin related protein 2/3 complex, subunit 4
17 Sobic.009G001900 expressed protein -
18 Sobic.003G131300 glycosyl hydrolases family 17 protein, putative, expressed -
19 Sobic.003G224300 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
20 Sobic.002G029300 pleckstrin homology domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G035400 Sobic001G035400 Sobic004G344800 Sobic004G344800 Sobic001G035400--Sobic004G344800 Sobic006G203900 Sobic006G203900 Sobic001G035400--Sobic006G203900 Sobic008G084100 Sobic008G084100 Sobic001G035400--Sobic008G084100 Sobic007G092100 Sobic007G092100 Sobic001G035400--Sobic007G092100 Sobic009G164700 Sobic009G164700 Sobic001G035400--Sobic009G164700 Sobic002G087000 Sobic002G087000 Sobic001G035400--Sobic002G087000 Sobic001G073600 Sobic001G073600 Sobic001G035400--Sobic001G073600 Sobic001G443200 Sobic001G443200 Sobic001G035400--Sobic001G443200 Sobic001G116000 Sobic001G116000 Sobic001G035400--Sobic001G116000 Sobic004G344800--Sobic001G073600 Sobic003G135600 Sobic003G135600 Sobic004G344800--Sobic003G135600 Sobic004G159000 Sobic004G159000 Sobic004G344800--Sobic004G159000 Sobic004G344800--Sobic001G035400 Sobic009G191400 Sobic009G191400 Sobic004G344800--Sobic009G191400 Sobic004G030000 Sobic004G030000 Sobic004G344800--Sobic004G030000 Sobic002G262200 Sobic002G262200 Sobic004G344800--Sobic002G262200 Sobic002G396700 Sobic002G396700 Sobic004G344800--Sobic002G396700 Sobic001G031900 Sobic001G031900 Sobic004G344800--Sobic001G031900 Sobic008G136800 Sobic008G136800 Sobic006G203900--Sobic008G136800 Sobic009G211900 Sobic009G211900 Sobic006G203900--Sobic009G211900 Sobic006G203900--Sobic001G035400 Sobic006G203900--Sobic001G073600 Sobic004G138300 Sobic004G138300 Sobic006G203900--Sobic004G138300 Sobic006G124300 Sobic006G124300 Sobic006G203900--Sobic006G124300 Sobic006G203900--Sobic003G135600 Sobic009G001900 Sobic009G001900 Sobic006G203900--Sobic009G001900 Sobic007G013900 Sobic007G013900 Sobic006G203900--Sobic007G013900 Sobic010G277000 Sobic010G277000 Sobic008G084100--Sobic010G277000 Sobic008G084100--Sobic001G035400 Sobic003G238500 Sobic003G238500 Sobic008G084100--Sobic003G238500 Sobic008G084100--Sobic001G073600 Sobic007G048700 Sobic007G048700 Sobic008G084100--Sobic007G048700 Sobic001G370700 Sobic001G370700 Sobic008G084100--Sobic001G370700 Sobic001G413100 Sobic001G413100 Sobic008G084100--Sobic001G413100 Sobic002G232400 Sobic002G232400 Sobic008G084100--Sobic002G232400 Sobic008G084100--Sobic006G203900 Sobic004G066800 Sobic004G066800 Sobic007G092100--Sobic004G066800 Sobic001G057300 Sobic001G057300 Sobic007G092100--Sobic001G057300 Sobic001G505500 Sobic001G505500 Sobic007G092100--Sobic001G505500 Sobic007G092100--Sobic001G035400 Sobic001G342200 Sobic001G342200 Sobic007G092100--Sobic001G342200 Sobic003G330500 Sobic003G330500 Sobic007G092100--Sobic003G330500 Sobic001G096100 Sobic001G096100 Sobic007G092100--Sobic001G096100 Sobic004G138800 Sobic004G138800 Sobic007G092100--Sobic004G138800 Sobic009G191200 Sobic009G191200 Sobic007G092100--Sobic009G191200 Sobic009G164700--Sobic001G035400 Sobic009G164700--Sobic007G092100 Sobic001G542900 Sobic001G542900 Sobic009G164700--Sobic001G542900 Sobic001G010700 Sobic001G010700 Sobic009G164700--Sobic001G010700 Sobic009G164700--Sobic003G330500 Sobic001G196100 Sobic001G196100 Sobic009G164700--Sobic001G196100 Sobic009G164700--Sobic006G203900 Sobic009G164700--Sobic004G066800 Sobic009G164700--Sobic001G096100 Sobic002G087000--Sobic001G035400 Sobic002G141700 Sobic002G141700 Sobic002G087000--Sobic002G141700 Sobic002G087000--Sobic001G443200 Sobic009G234400 Sobic009G234400 Sobic002G087000--Sobic009G234400 Sobic002G087000--Sobic001G196100 Sobic007G176200 Sobic007G176200 Sobic002G087000--Sobic007G176200 Sobic003G224300 Sobic003G224300 Sobic002G087000--Sobic003G224300 Sobic006G211800 Sobic006G211800 Sobic002G087000--Sobic006G211800 Sobic005G105500 Sobic005G105500 Sobic002G087000--Sobic005G105500 Sobic001G073600--Sobic009G191400 Sobic009G224400 Sobic009G224400 Sobic001G073600--Sobic009G224400 Sobic001G073600--Sobic003G135600 Sobic002G395000 Sobic002G395000 Sobic001G073600--Sobic002G395000 Sobic001G073600--Sobic004G344800 Sobic007G119600 Sobic007G119600 Sobic001G073600--Sobic007G119600 Sobic004G347600 Sobic004G347600 Sobic001G073600--Sobic004G347600 Sobic001G458800 Sobic001G458800 Sobic001G073600--Sobic001G458800 Sobic004G155100 Sobic004G155100 Sobic001G073600--Sobic004G155100 Sobic008G102600 Sobic008G102600 Sobic001G443200--Sobic008G102600 Sobic004G000100 Sobic004G000100 Sobic001G443200--Sobic004G000100 Sobic004G039400 Sobic004G039400 Sobic001G443200--Sobic004G039400 Sobic001G112400 Sobic001G112400 Sobic001G443200--Sobic001G112400 Sobic001G443200--Sobic004G344800 Sobic001G443200--Sobic002G141700 Sobic010G040900 Sobic010G040900 Sobic001G443200--Sobic010G040900 Sobic001G443200--Sobic001G073600 Sobic001G443200--Sobic002G262200 Sobic001G116000--Sobic001G196100 Sobic001G116000--Sobic001G035400 Sobic007G044400 Sobic007G044400 Sobic001G116000--Sobic007G044400 Sobic001G116000--Sobic007G048700 Sobic002G313600 Sobic002G313600 Sobic001G116000--Sobic002G313600 Sobic001G116000--Sobic008G084100 Sobic001G026600 Sobic001G026600 Sobic001G116000--Sobic001G026600 Sobic004G031800 Sobic004G031800 Sobic001G116000--Sobic004G031800 Sobic004G184000 Sobic004G184000 Sobic001G116000--Sobic004G184000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.