Gene annotation
Transcriptome id Sobic.010G277000.1
Synonym Sb10g031070
Functional annotation exosome complex exonuclease, putative, expressed
UniProt C5Z2L4
Pfam PF03725 PF01138
Panther DB PTHR11097 PTHR11097:SF8
NCBI CDD KOG1612; Exosomal 3'-5' exoribonuclease complex, subunit Rrp42
KEGG Orthology K12589; RRP42, exosome complex component RRP42
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G07750 : 3\'-5\'-exoribonuclease family protein
RAP-DB (Rice) LOC_Os12g21500.1 : exosome complex exonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a018578 , Zm00025a018574 , Zm00025a018576
Brachypodium KQJ95504 , PNT75061 , KQJ95503 , KQK16180 , KQK16179
Barley HORVU7Hr1G072710.4 , HORVU7Hr1G072710.5 , HORVU7Hr1G072710.6 , HORVU7Hr1G072710.7 , HORVU7Hr1G072710.2 , HORVU7Hr1G072710.3 , HORVU7Hr1G072710.8 , HORVU7Hr1G072710.9 , HORVU7Hr1G072710.14 , HORVU7Hr1G072710.12 , HORVU7Hr1G072710.13 , HORVU7Hr1G072710.10 , HORVU7Hr1G072710.11
Wheat TraesCS7A02G305800 , TraesCS7D02G302500 , TraesCS7B02G206000 , TraesCS7B02G206000 , TraesCS7B02G206000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G084100 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
2 Sobic.007G191600 exosome complex exonuclease, putative, expressed K12586: RRP43, EXOSC8, exosome complex component RRP43
3 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
4 Sobic.001G214900 expressed protein -
5 Sobic.003G238500 -(PubMedID : 26976818)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
6 Sobic.001G026600 - -
7 Sobic.002G054000 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
8 Sobic.003G205400 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
9 Sobic.005G027300 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
10 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
11 Sobic.003G348200 Lung seven transmembrane receptor domain containing protein, putative, expressed -
12 Sobic.002G402500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
13 Sobic.010G038700 expressed protein -
14 Sobic.002G087000 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2
15 Sobic.004G294900 expressed protein -
16 Sobic.003G261100 WD repeat-containing protein, putative, expressed K14753: guanine nucleotide-binding protein subunit beta-2-like 1 protein
17 Sobic.001G392800 NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed K03949: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5
18 Sobic.003G224300 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
19 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
20 Sobic.001G176900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial


Gene co-expression network
sample Sobic010G277000 Sobic010G277000 Sobic008G084100 Sobic008G084100 Sobic010G277000--Sobic008G084100 Sobic007G191600 Sobic007G191600 Sobic010G277000--Sobic007G191600 Sobic001G035400 Sobic001G035400 Sobic010G277000--Sobic001G035400 Sobic001G214900 Sobic001G214900 Sobic010G277000--Sobic001G214900 Sobic003G238500 Sobic003G238500 Sobic010G277000--Sobic003G238500 Sobic001G026600 Sobic001G026600 Sobic010G277000--Sobic001G026600 Sobic002G054000 Sobic002G054000 Sobic010G277000--Sobic002G054000 Sobic003G205400 Sobic003G205400 Sobic010G277000--Sobic003G205400 Sobic005G027300 Sobic005G027300 Sobic010G277000--Sobic005G027300 Sobic008G084100--Sobic010G277000 Sobic008G084100--Sobic001G035400 Sobic008G084100--Sobic003G238500 Sobic001G073600 Sobic001G073600 Sobic008G084100--Sobic001G073600 Sobic007G048700 Sobic007G048700 Sobic008G084100--Sobic007G048700 Sobic001G370700 Sobic001G370700 Sobic008G084100--Sobic001G370700 Sobic001G413100 Sobic001G413100 Sobic008G084100--Sobic001G413100 Sobic002G232400 Sobic002G232400 Sobic008G084100--Sobic002G232400 Sobic006G203900 Sobic006G203900 Sobic008G084100--Sobic006G203900 Sobic007G191600--Sobic010G277000 Sobic003G261100 Sobic003G261100 Sobic007G191600--Sobic003G261100 Sobic007G191600--Sobic005G027300 Sobic003G237400 Sobic003G237400 Sobic007G191600--Sobic003G237400 Sobic003G113400 Sobic003G113400 Sobic007G191600--Sobic003G113400 Sobic007G191600--Sobic008G084100 Sobic001G060300 Sobic001G060300 Sobic007G191600--Sobic001G060300 Sobic001G342200 Sobic001G342200 Sobic007G191600--Sobic001G342200 Sobic001G392800 Sobic001G392800 Sobic007G191600--Sobic001G392800 Sobic004G344800 Sobic004G344800 Sobic001G035400--Sobic004G344800 Sobic001G035400--Sobic006G203900 Sobic001G035400--Sobic008G084100 Sobic007G092100 Sobic007G092100 Sobic001G035400--Sobic007G092100 Sobic009G164700 Sobic009G164700 Sobic001G035400--Sobic009G164700 Sobic002G087000 Sobic002G087000 Sobic001G035400--Sobic002G087000 Sobic001G035400--Sobic001G073600 Sobic001G443200 Sobic001G443200 Sobic001G035400--Sobic001G443200 Sobic001G116000 Sobic001G116000 Sobic001G035400--Sobic001G116000 Sobic001G214900--Sobic001G060300 Sobic002G367800 Sobic002G367800 Sobic001G214900--Sobic002G367800 Sobic001G214900--Sobic003G261100 Sobic001G214900--Sobic003G205400 Sobic010G134100 Sobic010G134100 Sobic001G214900--Sobic010G134100 Sobic001G214900--Sobic010G277000 Sobic007G143000 Sobic007G143000 Sobic001G214900--Sobic007G143000 Sobic002G402500 Sobic002G402500 Sobic001G214900--Sobic002G402500 Sobic001G530800 Sobic001G530800 Sobic001G214900--Sobic001G530800 Sobic002G395000 Sobic002G395000 Sobic003G238500--Sobic002G395000 Sobic003G322300 Sobic003G322300 Sobic003G238500--Sobic003G322300 Sobic004G260200 Sobic004G260200 Sobic003G238500--Sobic004G260200 Sobic004G294900 Sobic004G294900 Sobic003G238500--Sobic004G294900 Sobic004G155100 Sobic004G155100 Sobic003G238500--Sobic004G155100 Sobic009G240700 Sobic009G240700 Sobic003G238500--Sobic009G240700 Sobic003G238500--Sobic006G203900 Sobic003G238500--Sobic008G084100 Sobic003G238500--Sobic001G073600 Sobic001G026600--Sobic001G530800 Sobic007G044400 Sobic007G044400 Sobic001G026600--Sobic007G044400 Sobic001G026600--Sobic010G277000 Sobic001G196100 Sobic001G196100 Sobic001G026600--Sobic001G196100 Sobic001G026600--Sobic001G116000 Sobic001G026600--Sobic008G084100 Sobic003G319000 Sobic003G319000 Sobic001G026600--Sobic003G319000 Sobic002G313600 Sobic002G313600 Sobic001G026600--Sobic002G313600 Sobic001G436100 Sobic001G436100 Sobic001G026600--Sobic001G436100 Sobic008G135000 Sobic008G135000 Sobic002G054000--Sobic008G135000 Sobic009G233400 Sobic009G233400 Sobic002G054000--Sobic009G233400 Sobic001G058900 Sobic001G058900 Sobic002G054000--Sobic001G058900 Sobic005G050500 Sobic005G050500 Sobic002G054000--Sobic005G050500 Sobic001G334300 Sobic001G334300 Sobic002G054000--Sobic001G334300 Sobic002G304900 Sobic002G304900 Sobic002G054000--Sobic002G304900 Sobic004G342400 Sobic004G342400 Sobic002G054000--Sobic004G342400 Sobic009G191200 Sobic009G191200 Sobic002G054000--Sobic009G191200 Sobic010G005300 Sobic010G005300 Sobic002G054000--Sobic010G005300 Sobic003G205400--Sobic002G402500 Sobic003G205400--Sobic001G214900 Sobic001G522000 Sobic001G522000 Sobic003G205400--Sobic001G522000 Sobic003G388900 Sobic003G388900 Sobic003G205400--Sobic003G388900 Sobic003G205400--Sobic002G367800 Sobic003G205400--Sobic010G277000 Sobic003G205400--Sobic010G134100 Sobic003G205400--Sobic001G413100 Sobic002G423500 Sobic002G423500 Sobic003G205400--Sobic002G423500 Sobic003G196800 Sobic003G196800 Sobic005G027300--Sobic003G196800 Sobic001G096100 Sobic001G096100 Sobic005G027300--Sobic001G096100 Sobic008G098800 Sobic008G098800 Sobic005G027300--Sobic008G098800 Sobic009G001900 Sobic009G001900 Sobic005G027300--Sobic009G001900 Sobic004G066800 Sobic004G066800 Sobic005G027300--Sobic004G066800 Sobic005G027300--Sobic001G342200 Sobic001G025600 Sobic001G025600 Sobic005G027300--Sobic001G025600 Sobic001G481700 Sobic001G481700 Sobic005G027300--Sobic001G481700 Sobic001G513500 Sobic001G513500 Sobic005G027300--Sobic001G513500
Octagon: transcription factors


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