Gene annotation
Transcriptome id Sobic.003G238500.1
Synonym mMDH2, Sb03g029570
Functional annotation - (PubMedID : 26976818)
lactate/malate dehydrogenase, putative, expressed
UniProt A0A1B6Q515
Pfam PF00056 PF02866
Panther DB PTHR11540
NCBI CDD -
KEGG Orthology K00026; malate dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor


Orthologs (automatic annotation)
TAIR AT3G15020 : Lactate/malate dehydrogenase family protein
RAP-DB (Rice) LOC_Os01g46070.1 : lactate/malate dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a036673 , Zm00025a028236 , Zm00025a044656
Brachypodium KQK08974 , KQK04752
Barley HORVU1Hr1G090710.18 , HORVU1Hr1G090710.19 , HORVU1Hr1G090710.10 , HORVU1Hr1G090710.11 , HORVU1Hr1G090720.1 , HORVU1Hr1G090710.13 , HORVU1Hr1G090710.14 , HORVU1Hr1G090710.15 , HORVU1Hr1G090710.16 , HORVU1Hr1G090710.17 , HORVU1Hr1G090710.8 , HORVU1Hr1G090710.9 , HORVU1Hr1G090710.2 , HORVU1Hr1G090710.3 , HORVU1Hr1G090710.1 , HORVU1Hr1G090710.6 , HORVU1Hr1G090710.4 , HORVU1Hr1G090710.5 , HORVU3Hr1G058460.1 , HORVU3Hr1G058460.6 , HORVU3Hr1G058460.7 , HORVU3Hr1G058460.4 , HORVU3Hr1G058460.5 , HORVU3Hr1G058460.2 , HORVU3Hr1G058460.3 , HORVU3Hr1G058460.8 , HORVU1Hr1G090710.12
Wheat TraesCS3D02G236200 , TraesCS3A02G234800 , TraesCS3A02G234800 , TraesCS3A02G234800 , TraesCS1D02G420500 , TraesCS1A02G412900 , TraesCS1A02G412900 , TraesCS1B02G443200 , TraesCS3B02G265000
Populus -


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cDNA sequences
Sobic.003G238500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
2 Sobic.003G322300 expressed protein -
3 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
4 Sobic.004G294900 expressed protein -
5 Sobic.004G155100 uncharacterized protein MJ0304, putative, expressed -
6 Sobic.009G240700 -(PubMedID : 26976818)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
7 Sobic.006G203900 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
8 Sobic.008G084100 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
9 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
10 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
11 Sobic.009G001900 expressed protein -
12 Sobic.002G131600 expressed protein -
13 Sobic.002G078300 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
14 Sobic.009G211900 expressed protein -
15 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
16 Sobic.001G286200 expressed protein K03966: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 10
17 Sobic.001G370700 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
18 Sobic.002G262200 expressed protein -
19 Sobic.010G264300 LYR motif containing protein, putative, expressed K03965: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9
20 Sobic.002G356400 NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4


Gene co-expression network
sample Sobic003G238500 Sobic003G238500 Sobic002G395000 Sobic002G395000 Sobic003G238500--Sobic002G395000 Sobic003G322300 Sobic003G322300 Sobic003G238500--Sobic003G322300 Sobic004G260200 Sobic004G260200 Sobic003G238500--Sobic004G260200 Sobic004G294900 Sobic004G294900 Sobic003G238500--Sobic004G294900 Sobic004G155100 Sobic004G155100 Sobic003G238500--Sobic004G155100 Sobic009G240700 Sobic009G240700 Sobic003G238500--Sobic009G240700 Sobic006G203900 Sobic006G203900 Sobic003G238500--Sobic006G203900 Sobic008G084100 Sobic008G084100 Sobic003G238500--Sobic008G084100 Sobic001G073600 Sobic001G073600 Sobic003G238500--Sobic001G073600 Sobic002G395000--Sobic004G260200 Sobic003G135600 Sobic003G135600 Sobic002G395000--Sobic003G135600 Sobic009G224400 Sobic009G224400 Sobic002G395000--Sobic009G224400 Sobic002G395000--Sobic003G238500 Sobic002G309700 Sobic002G309700 Sobic002G395000--Sobic002G309700 Sobic002G395000--Sobic001G073600 Sobic002G395000--Sobic004G155100 Sobic007G023400 Sobic007G023400 Sobic002G395000--Sobic007G023400 Sobic002G078300 Sobic002G078300 Sobic002G395000--Sobic002G078300 Sobic003G322300--Sobic003G238500 Sobic001G286200 Sobic001G286200 Sobic003G322300--Sobic001G286200 Sobic009G001900 Sobic009G001900 Sobic003G322300--Sobic009G001900 Sobic003G322300--Sobic002G395000 Sobic003G322300--Sobic006G203900 Sobic003G322300--Sobic002G078300 Sobic002G296200 Sobic002G296200 Sobic003G322300--Sobic002G296200 Sobic002G180300 Sobic002G180300 Sobic003G322300--Sobic002G180300 Sobic002G356400 Sobic002G356400 Sobic003G322300--Sobic002G356400 Sobic004G260200--Sobic002G309700 Sobic001G047800 Sobic001G047800 Sobic004G260200--Sobic001G047800 Sobic001G465800 Sobic001G465800 Sobic004G260200--Sobic001G465800 Sobic004G260200--Sobic002G395000 Sobic004G260200--Sobic002G356400 Sobic001G404800 Sobic001G404800 Sobic004G260200--Sobic001G404800 Sobic009G215300 Sobic009G215300 Sobic004G260200--Sobic009G215300 Sobic002G263100 Sobic002G263100 Sobic004G260200--Sobic002G263100 Sobic001G074700 Sobic001G074700 Sobic004G260200--Sobic001G074700 Sobic004G294900--Sobic003G238500 Sobic002G131600 Sobic002G131600 Sobic004G294900--Sobic002G131600 Sobic004G294900--Sobic009G001900 Sobic004G294900--Sobic002G395000 Sobic001G370700 Sobic001G370700 Sobic004G294900--Sobic001G370700 Sobic006G124300 Sobic006G124300 Sobic004G294900--Sobic006G124300 Sobic004G294900--Sobic002G078300 Sobic004G294900--Sobic003G322300 Sobic004G294900--Sobic004G260200 Sobic004G155100--Sobic003G135600 Sobic004G155100--Sobic002G309700 Sobic004G155100--Sobic002G395000 Sobic004G155100--Sobic009G224400 Sobic004G155100--Sobic004G260200 Sobic004G155100--Sobic001G073600 Sobic004G155100--Sobic009G240700 Sobic001G206700 Sobic001G206700 Sobic004G155100--Sobic001G206700 Sobic004G155100--Sobic002G180300 Sobic003G170300 Sobic003G170300 Sobic009G240700--Sobic003G170300 Sobic009G240700--Sobic004G155100 Sobic009G240700--Sobic003G238500 Sobic001G473400 Sobic001G473400 Sobic009G240700--Sobic001G473400 Sobic009G240700--Sobic002G395000 Sobic009G240700--Sobic002G078300 Sobic009G240700--Sobic001G286200 Sobic010G264300 Sobic010G264300 Sobic009G240700--Sobic010G264300 Sobic001G282500 Sobic001G282500 Sobic009G240700--Sobic001G282500 Sobic008G136800 Sobic008G136800 Sobic006G203900--Sobic008G136800 Sobic009G211900 Sobic009G211900 Sobic006G203900--Sobic009G211900 Sobic001G035400 Sobic001G035400 Sobic006G203900--Sobic001G035400 Sobic006G203900--Sobic001G073600 Sobic004G138300 Sobic004G138300 Sobic006G203900--Sobic004G138300 Sobic006G203900--Sobic006G124300 Sobic006G203900--Sobic003G135600 Sobic006G203900--Sobic009G001900 Sobic007G013900 Sobic007G013900 Sobic006G203900--Sobic007G013900 Sobic010G277000 Sobic010G277000 Sobic008G084100--Sobic010G277000 Sobic008G084100--Sobic001G035400 Sobic008G084100--Sobic003G238500 Sobic008G084100--Sobic001G073600 Sobic007G048700 Sobic007G048700 Sobic008G084100--Sobic007G048700 Sobic008G084100--Sobic001G370700 Sobic001G413100 Sobic001G413100 Sobic008G084100--Sobic001G413100 Sobic002G232400 Sobic002G232400 Sobic008G084100--Sobic002G232400 Sobic008G084100--Sobic006G203900 Sobic009G191400 Sobic009G191400 Sobic001G073600--Sobic009G191400 Sobic001G073600--Sobic009G224400 Sobic001G073600--Sobic003G135600 Sobic001G073600--Sobic002G395000 Sobic004G344800 Sobic004G344800 Sobic001G073600--Sobic004G344800 Sobic007G119600 Sobic007G119600 Sobic001G073600--Sobic007G119600 Sobic004G347600 Sobic004G347600 Sobic001G073600--Sobic004G347600 Sobic001G458800 Sobic001G458800 Sobic001G073600--Sobic001G458800 Sobic001G073600--Sobic004G155100
Octagon: transcription factors


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