Gene annotation
Transcriptome id Sobic.003G135600.1
Synonym GAMMACA1, Sb03g011540
Functional annotation bacterial transferase hexapeptide domain containing protein, expressed
UniProt C5XHE5
Pfam PF00132
Panther DB PTHR13061 PTHR13061:SF9
NCBI CDD KOG4042; Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G19580 : gamma carbonic anhydrase 1
RAP-DB (Rice) LOC_Os01g18070.1 : bacterial transferase hexapeptide domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035180 , Zm00025a024206
Brachypodium KQK03981
Barley HORVU3Hr1G045680.2 , HORVU7Hr1G022550.7 , HORVU7Hr1G022550.5 , HORVU7Hr1G022550.4 , HORVU7Hr1G022550.3 , HORVU7Hr1G022550.2 , HORVU7Hr1G022550.1 , HORVU7Hr1G022550.9 , HORVU7Hr1G022550.8 , HORVU6Hr1G050700.1 , HORVU3Hr1G045680.1
Wheat TraesCS7B02G005800 , TraesCS7A02G107200 , TraesCS7D02G101600 , TraesCS3D02G199500 , TraesCS3B02G224000 , TraesCS3A02G193500
Populus PNT38212 , PNT38213


JBrowse

Open New Page


cDNA sequences
Sobic.003G135600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G155100 uncharacterized protein MJ0304, putative, expressed -
2 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
3 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
4 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
5 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
6 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
7 Sobic.001G181500 expressed protein -
8 Sobic.009G211900 expressed protein -
9 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
10 Sobic.009G215300 fiber protein Fb11, putative, expressed -
11 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
12 Sobic.002G262200 expressed protein -
13 Sobic.002G079700 ribosomal protein L22, putative, expressed K02890: RP-L22, MRPL22, large subunit ribosomal protein L22
14 Sobic.001G206700 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit
15 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
16 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -
17 Sobic.006G203900 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
18 Sobic.003G388700 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
19 Sobic.004G030000 mitochondrial ATP synthase precursor, putative, expressed -
20 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1


Gene co-expression network
sample Sobic003G135600 Sobic003G135600 Sobic004G155100 Sobic004G155100 Sobic003G135600--Sobic004G155100 Sobic002G395000 Sobic002G395000 Sobic003G135600--Sobic002G395000 Sobic001G073600 Sobic001G073600 Sobic003G135600--Sobic001G073600 Sobic009G224400 Sobic009G224400 Sobic003G135600--Sobic009G224400 Sobic002G309700 Sobic002G309700 Sobic003G135600--Sobic002G309700 Sobic009G191400 Sobic009G191400 Sobic003G135600--Sobic009G191400 Sobic001G181500 Sobic001G181500 Sobic003G135600--Sobic001G181500 Sobic009G211900 Sobic009G211900 Sobic003G135600--Sobic009G211900 Sobic004G260200 Sobic004G260200 Sobic003G135600--Sobic004G260200 Sobic004G155100--Sobic003G135600 Sobic004G155100--Sobic002G309700 Sobic004G155100--Sobic002G395000 Sobic004G155100--Sobic009G224400 Sobic004G155100--Sobic004G260200 Sobic004G155100--Sobic001G073600 Sobic009G240700 Sobic009G240700 Sobic004G155100--Sobic009G240700 Sobic001G206700 Sobic001G206700 Sobic004G155100--Sobic001G206700 Sobic002G180300 Sobic002G180300 Sobic004G155100--Sobic002G180300 Sobic002G395000--Sobic004G260200 Sobic002G395000--Sobic003G135600 Sobic002G395000--Sobic009G224400 Sobic003G238500 Sobic003G238500 Sobic002G395000--Sobic003G238500 Sobic002G395000--Sobic002G309700 Sobic002G395000--Sobic001G073600 Sobic002G395000--Sobic004G155100 Sobic007G023400 Sobic007G023400 Sobic002G395000--Sobic007G023400 Sobic002G078300 Sobic002G078300 Sobic002G395000--Sobic002G078300 Sobic001G073600--Sobic009G191400 Sobic001G073600--Sobic009G224400 Sobic001G073600--Sobic003G135600 Sobic001G073600--Sobic002G395000 Sobic004G344800 Sobic004G344800 Sobic001G073600--Sobic004G344800 Sobic007G119600 Sobic007G119600 Sobic001G073600--Sobic007G119600 Sobic004G347600 Sobic004G347600 Sobic001G073600--Sobic004G347600 Sobic001G458800 Sobic001G458800 Sobic001G073600--Sobic001G458800 Sobic001G073600--Sobic004G155100 Sobic009G224400--Sobic001G073600 Sobic009G224400--Sobic009G191400 Sobic009G224400--Sobic002G395000 Sobic009G224400--Sobic007G119600 Sobic009G224400--Sobic003G135600 Sobic009G224400--Sobic001G458800 Sobic009G224400--Sobic004G155100 Sobic003G034900 Sobic003G034900 Sobic009G224400--Sobic003G034900 Sobic002G262200 Sobic002G262200 Sobic009G224400--Sobic002G262200 Sobic002G309700--Sobic004G260200 Sobic001G047800 Sobic001G047800 Sobic002G309700--Sobic001G047800 Sobic002G356400 Sobic002G356400 Sobic002G309700--Sobic002G356400 Sobic009G215300 Sobic009G215300 Sobic002G309700--Sobic009G215300 Sobic001G404800 Sobic001G404800 Sobic002G309700--Sobic001G404800 Sobic001G074700 Sobic001G074700 Sobic002G309700--Sobic001G074700 Sobic002G296200 Sobic002G296200 Sobic002G309700--Sobic002G296200 Sobic001G465800 Sobic001G465800 Sobic002G309700--Sobic001G465800 Sobic003G215700 Sobic003G215700 Sobic002G309700--Sobic003G215700 Sobic009G191400--Sobic001G073600 Sobic009G191400--Sobic009G224400 Sobic009G191400--Sobic004G347600 Sobic009G191400--Sobic007G119600 Sobic009G191400--Sobic003G135600 Sobic009G191400--Sobic004G344800 Sobic009G191400--Sobic002G262200 Sobic009G191400--Sobic001G458800 Sobic002G396700 Sobic002G396700 Sobic009G191400--Sobic002G396700 Sobic001G181500--Sobic009G215300 Sobic001G181500--Sobic009G211900 Sobic001G181500--Sobic003G135600 Sobic001G181500--Sobic002G309700 Sobic001G181500--Sobic001G206700 Sobic004G030000 Sobic004G030000 Sobic001G181500--Sobic004G030000 Sobic001G282500 Sobic001G282500 Sobic001G181500--Sobic001G282500 Sobic007G012900 Sobic007G012900 Sobic001G181500--Sobic007G012900 Sobic001G181500--Sobic004G260200 Sobic009G211900--Sobic009G215300 Sobic006G124300 Sobic006G124300 Sobic009G211900--Sobic006G124300 Sobic009G211900--Sobic001G181500 Sobic006G203900 Sobic006G203900 Sobic009G211900--Sobic006G203900 Sobic009G211900--Sobic003G135600 Sobic009G211900--Sobic002G309700 Sobic008G136800 Sobic008G136800 Sobic009G211900--Sobic008G136800 Sobic009G211900--Sobic001G073600 Sobic009G211900--Sobic004G260200 Sobic004G260200--Sobic002G309700 Sobic004G260200--Sobic001G047800 Sobic004G260200--Sobic001G465800 Sobic004G260200--Sobic002G395000 Sobic004G260200--Sobic002G356400 Sobic004G260200--Sobic001G404800 Sobic004G260200--Sobic009G215300 Sobic002G263100 Sobic002G263100 Sobic004G260200--Sobic002G263100 Sobic004G260200--Sobic001G074700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.