Gene annotation
Transcriptome id Sobic.007G119600.1
Synonym Sb07g019495
Functional annotation clathrin adaptor complex small chain domain containing protein, expressed
UniProt A0A1B6PHC6
Pfam PF01217
Panther DB PTHR11753
NCBI CDD KOG0934; Clathrin adaptor complex, small subunit
KEGG Orthology K12403; AP-4 complex subunit sigma-1
Gene Ontology GO:0015031; protein transport GO:0008565obsolete protein transporter activity


Orthologs (automatic annotation)
TAIR AT2G19790 : SNARE-like superfamily protein
RAP-DB (Rice) LOC_Os08g30480.1 : clathrin adaptor complex small chain domain containing protein, expressed
MaizeGDB (Corn) Zm00025a030982
Brachypodium KQJ98209
Barley HORVU1Hr1G024550.1
Wheat TraesCS6B02G140700 , TraesCS6D02G101600 , TraesCS6A02G113800
Populus -


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cDNA sequences
Sobic.007G119600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
2 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
3 Sobic.006G041800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
4 Sobic.001G457000 ATP synthase gamma chain, putative, expressed K02136: ATPeF1G, ATP5C1, F-type H+-transporting ATPase subunit gamma
5 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
6 Sobic.002G255400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K09569: FK506-binding protein 2
7 Sobic.003G028200 expressed protein -
8 Sobic.003G388700 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
9 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
10 Sobic.002G262200 expressed protein -
11 Sobic.002G186300 serine/threonine-protein kinase 16, putative, expressed K08856: serine/threonine kinase 16
12 Sobic.004G347600 vacuolar ATP synthase subunit H, putative, expressed K02144: V-type H+-transporting ATPase subunit H
13 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
14 Sobic.009G259200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
15 Sobic.001G387200 expressed protein -
16 Sobic.001G458800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
17 Sobic.003G034900 mitochondrial-processing peptidase subunit alpha, mitochondrial precursor, putative, expressed K01412: PMPCA, mitochondrial-processing peptidase subunit alpha
18 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19
19 Sobic.003G276100 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
20 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40


Gene co-expression network
sample Sobic007G119600 Sobic007G119600 Sobic009G224400 Sobic009G224400 Sobic007G119600--Sobic009G224400 Sobic009G191400 Sobic009G191400 Sobic007G119600--Sobic009G191400 Sobic006G041800 Sobic006G041800 Sobic007G119600--Sobic006G041800 Sobic001G457000 Sobic001G457000 Sobic007G119600--Sobic001G457000 Sobic001G073600 Sobic001G073600 Sobic007G119600--Sobic001G073600 Sobic002G255400 Sobic002G255400 Sobic007G119600--Sobic002G255400 Sobic003G028200 Sobic003G028200 Sobic007G119600--Sobic003G028200 Sobic003G388700 Sobic003G388700 Sobic007G119600--Sobic003G388700 Sobic003G260600 Sobic003G260600 Sobic007G119600--Sobic003G260600 Sobic009G224400--Sobic001G073600 Sobic009G224400--Sobic009G191400 Sobic002G395000 Sobic002G395000 Sobic009G224400--Sobic002G395000 Sobic009G224400--Sobic007G119600 Sobic003G135600 Sobic003G135600 Sobic009G224400--Sobic003G135600 Sobic001G458800 Sobic001G458800 Sobic009G224400--Sobic001G458800 Sobic004G155100 Sobic004G155100 Sobic009G224400--Sobic004G155100 Sobic003G034900 Sobic003G034900 Sobic009G224400--Sobic003G034900 Sobic002G262200 Sobic002G262200 Sobic009G224400--Sobic002G262200 Sobic009G191400--Sobic001G073600 Sobic009G191400--Sobic009G224400 Sobic004G347600 Sobic004G347600 Sobic009G191400--Sobic004G347600 Sobic009G191400--Sobic007G119600 Sobic009G191400--Sobic003G135600 Sobic004G344800 Sobic004G344800 Sobic009G191400--Sobic004G344800 Sobic009G191400--Sobic002G262200 Sobic009G191400--Sobic001G458800 Sobic002G396700 Sobic002G396700 Sobic009G191400--Sobic002G396700 Sobic006G041800--Sobic007G119600 Sobic001G008100 Sobic001G008100 Sobic006G041800--Sobic001G008100 Sobic003G276100 Sobic003G276100 Sobic006G041800--Sobic003G276100 Sobic001G485300 Sobic001G485300 Sobic006G041800--Sobic001G485300 Sobic002G276800 Sobic002G276800 Sobic006G041800--Sobic002G276800 Sobic007G012900 Sobic007G012900 Sobic006G041800--Sobic007G012900 Sobic006G041800--Sobic003G388700 Sobic001G387800 Sobic001G387800 Sobic006G041800--Sobic001G387800 Sobic006G041800--Sobic002G255400 Sobic001G457000--Sobic007G119600 Sobic004G093600 Sobic004G093600 Sobic001G457000--Sobic004G093600 Sobic004G218600 Sobic004G218600 Sobic001G457000--Sobic004G218600 Sobic009G259200 Sobic009G259200 Sobic001G457000--Sobic009G259200 Sobic001G457000--Sobic009G224400 Sobic001G457000--Sobic003G034900 Sobic001G387200 Sobic001G387200 Sobic001G457000--Sobic001G387200 Sobic010G032600 Sobic010G032600 Sobic001G457000--Sobic010G032600 Sobic007G171500 Sobic007G171500 Sobic001G457000--Sobic007G171500 Sobic001G073600--Sobic009G191400 Sobic001G073600--Sobic009G224400 Sobic001G073600--Sobic003G135600 Sobic001G073600--Sobic002G395000 Sobic001G073600--Sobic004G344800 Sobic001G073600--Sobic007G119600 Sobic001G073600--Sobic004G347600 Sobic001G073600--Sobic001G458800 Sobic001G073600--Sobic004G155100 Sobic002G255400--Sobic003G260600 Sobic003G089100 Sobic003G089100 Sobic002G255400--Sobic003G089100 Sobic007G014700 Sobic007G014700 Sobic002G255400--Sobic007G014700 Sobic008G018300 Sobic008G018300 Sobic002G255400--Sobic008G018300 Sobic002G420600 Sobic002G420600 Sobic002G255400--Sobic002G420600 Sobic003G201500 Sobic003G201500 Sobic002G255400--Sobic003G201500 Sobic003G013700 Sobic003G013700 Sobic002G255400--Sobic003G013700 Sobic002G352200 Sobic002G352200 Sobic002G255400--Sobic002G352200 Sobic002G255400--Sobic001G387200 Sobic003G028200--Sobic009G224400 Sobic003G028200--Sobic002G255400 Sobic003G028200--Sobic003G260600 Sobic003G028200--Sobic007G119600 Sobic003G028200--Sobic009G191400 Sobic003G028200--Sobic001G457000 Sobic003G028200--Sobic001G073600 Sobic003G028200--Sobic009G259200 Sobic003G028200--Sobic002G352200 Sobic003G388700--Sobic007G119600 Sobic003G388700--Sobic001G073600 Sobic003G388700--Sobic003G135600 Sobic003G388700--Sobic009G191400 Sobic002G079700 Sobic002G079700 Sobic003G388700--Sobic002G079700 Sobic001G473400 Sobic001G473400 Sobic003G388700--Sobic001G473400 Sobic010G002800 Sobic010G002800 Sobic003G388700--Sobic010G002800 Sobic010G258000 Sobic010G258000 Sobic003G388700--Sobic010G258000 Sobic003G388700--Sobic006G041800 Sobic003G260600--Sobic002G255400 Sobic003G260600--Sobic003G201500 Sobic003G260600--Sobic003G089100 Sobic008G132200 Sobic008G132200 Sobic003G260600--Sobic008G132200 Sobic001G378800 Sobic001G378800 Sobic003G260600--Sobic001G378800 Sobic003G372200 Sobic003G372200 Sobic003G260600--Sobic003G372200 Sobic003G260600--Sobic002G420600 Sobic008G072500 Sobic008G072500 Sobic003G260600--Sobic008G072500 Sobic003G260600--Sobic007G014700
Octagon: transcription factors


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