Gene annotation
Transcriptome id Sobic.003G276100.2,Sobic.003G276100.1
Synonym ATRABG3A, RABG3A, Sb03g032810
Functional annotation ras-related protein, putative, expressed
UniProt C5XIA1
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF586
NCBI CDD KOG0394; Ras-related GTPase
KEGG Orthology K07897; Ras-related protein Rab-7A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT4G09720 : RAB GTPase homolog G3A
RAP-DB (Rice) LOC_Os01g51700.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a044373 , Zm00025a038966
Brachypodium KQK05183 , KQK09458
Barley HORVU1Hr1G080330.4 , HORVU1Hr1G080330.1 , HORVU1Hr1G080330.3 , HORVU1Hr1G080330.2 , HORVU3Hr1G067530.3 , HORVU3Hr1G067530.6 , HORVU3Hr1G067530.7 , HORVU3Hr1G067530.4 , HORVU3Hr1G067530.5 , HORVU3Hr1G067530.8 , HORVU3Hr1G067530.9 , HORVU3Hr1G071820.1 , HORVU3Hr1G067530.10 , HORVU3Hr1G067530.11 , HORVU3Hr1G067530.12 , HORVU3Hr1G067530.13 , HORVU3Hr1G067530.14 , HORVU3Hr1G067530.15 , HORVU3Hr1G030910.4 , HORVU3Hr1G030910.5 , HORVU3Hr1G030910.1 , HORVU3Hr1G030910.2 , HORVU3Hr1G030910.3
Wheat TraesCS3D02G290000 , TraesCS3B02G324900 , TraesCS3B02G179400 , TraesCS1B02G374600 , TraesCS3D02G248400 , TraesCS3D02G248400 , TraesCS3B02G277200 , TraesCS1D02G362800 , TraesCS1A02G358000 , TraesCS3B02G324900 , TraesCS3A02G152300 , TraesCS3A02G248600 , TraesCS3D02G160100
Populus -


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cDNA sequences
Sobic.003G276100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G012900 50S ribosomal protein L19, chloroplast precursor, putative, expressed -
2 Sobic.006G041800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
3 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
4 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1
5 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
6 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
7 Sobic.001G387200 expressed protein -
8 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19
9 Sobic.007G117800 cytochrome b561, putative, expressed K08360: cytochrome b-561
10 Sobic.010G040900 trafficking protein particle complex subunit 4, putative, expressed -
11 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
12 Sobic.004G000100 uridine/cytidine kinase-like 1, putative, expressed K00876: udk, uridine kinase
13 Sobic.002G262200 expressed protein -
14 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
15 Sobic.003G129900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
16 Sobic.006G207600 expressed protein -
17 Sobic.004G093600 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
18 Sobic.008G102600 expressed protein -
19 Sobic.003G058500 expressed protein -
20 Sobic.001G378200 tetratricopeptide repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic003G276100 Sobic003G276100 Sobic007G012900 Sobic007G012900 Sobic003G276100--Sobic007G012900 Sobic006G041800 Sobic006G041800 Sobic003G276100--Sobic006G041800 Sobic001G008100 Sobic001G008100 Sobic003G276100--Sobic001G008100 Sobic007G119600 Sobic007G119600 Sobic003G276100--Sobic007G119600 Sobic001G443200 Sobic001G443200 Sobic003G276100--Sobic001G443200 Sobic009G191400 Sobic009G191400 Sobic003G276100--Sobic009G191400 Sobic001G387200 Sobic001G387200 Sobic003G276100--Sobic001G387200 Sobic001G178500 Sobic001G178500 Sobic003G276100--Sobic001G178500 Sobic007G117800 Sobic007G117800 Sobic003G276100--Sobic007G117800 Sobic001G181500 Sobic001G181500 Sobic007G012900--Sobic001G181500 Sobic007G012900--Sobic003G276100 Sobic002G401700 Sobic002G401700 Sobic007G012900--Sobic002G401700 Sobic007G012900--Sobic001G008100 Sobic007G012900--Sobic006G041800 Sobic003G148900 Sobic003G148900 Sobic007G012900--Sobic003G148900 Sobic003G135600 Sobic003G135600 Sobic007G012900--Sobic003G135600 Sobic007G012900--Sobic009G191400 Sobic002G079700 Sobic002G079700 Sobic007G012900--Sobic002G079700 Sobic006G041800--Sobic007G119600 Sobic006G041800--Sobic001G008100 Sobic006G041800--Sobic003G276100 Sobic001G485300 Sobic001G485300 Sobic006G041800--Sobic001G485300 Sobic002G276800 Sobic002G276800 Sobic006G041800--Sobic002G276800 Sobic006G041800--Sobic007G012900 Sobic003G388700 Sobic003G388700 Sobic006G041800--Sobic003G388700 Sobic001G387800 Sobic001G387800 Sobic006G041800--Sobic001G387800 Sobic002G255400 Sobic002G255400 Sobic006G041800--Sobic002G255400 Sobic004G039400 Sobic004G039400 Sobic001G008100--Sobic004G039400 Sobic001G008100--Sobic006G041800 Sobic001G465400 Sobic001G465400 Sobic001G008100--Sobic001G465400 Sobic010G040900 Sobic010G040900 Sobic001G008100--Sobic010G040900 Sobic001G008100--Sobic001G387800 Sobic001G008100--Sobic003G276100 Sobic001G008100--Sobic002G079700 Sobic001G008100--Sobic009G191400 Sobic001G008100--Sobic002G276800 Sobic009G224400 Sobic009G224400 Sobic007G119600--Sobic009G224400 Sobic007G119600--Sobic009G191400 Sobic007G119600--Sobic006G041800 Sobic001G457000 Sobic001G457000 Sobic007G119600--Sobic001G457000 Sobic001G073600 Sobic001G073600 Sobic007G119600--Sobic001G073600 Sobic007G119600--Sobic002G255400 Sobic003G028200 Sobic003G028200 Sobic007G119600--Sobic003G028200 Sobic007G119600--Sobic003G388700 Sobic003G260600 Sobic003G260600 Sobic007G119600--Sobic003G260600 Sobic008G102600 Sobic008G102600 Sobic001G443200--Sobic008G102600 Sobic004G000100 Sobic004G000100 Sobic001G443200--Sobic004G000100 Sobic001G443200--Sobic004G039400 Sobic001G112400 Sobic001G112400 Sobic001G443200--Sobic001G112400 Sobic004G344800 Sobic004G344800 Sobic001G443200--Sobic004G344800 Sobic002G141700 Sobic002G141700 Sobic001G443200--Sobic002G141700 Sobic001G443200--Sobic010G040900 Sobic001G443200--Sobic001G073600 Sobic002G262200 Sobic002G262200 Sobic001G443200--Sobic002G262200 Sobic009G191400--Sobic001G073600 Sobic009G191400--Sobic009G224400 Sobic004G347600 Sobic004G347600 Sobic009G191400--Sobic004G347600 Sobic009G191400--Sobic007G119600 Sobic009G191400--Sobic003G135600 Sobic009G191400--Sobic004G344800 Sobic009G191400--Sobic002G262200 Sobic001G458800 Sobic001G458800 Sobic009G191400--Sobic001G458800 Sobic002G396700 Sobic002G396700 Sobic009G191400--Sobic002G396700 Sobic003G129900 Sobic003G129900 Sobic001G387200--Sobic003G129900 Sobic004G093600 Sobic004G093600 Sobic001G387200--Sobic004G093600 Sobic006G120900 Sobic006G120900 Sobic001G387200--Sobic006G120900 Sobic004G173700 Sobic004G173700 Sobic001G387200--Sobic004G173700 Sobic008G018300 Sobic008G018300 Sobic001G387200--Sobic008G018300 Sobic004G256700 Sobic004G256700 Sobic001G387200--Sobic004G256700 Sobic001G387200--Sobic002G255400 Sobic002G420600 Sobic002G420600 Sobic001G387200--Sobic002G420600 Sobic005G019100 Sobic005G019100 Sobic001G387200--Sobic005G019100 Sobic001G178500--Sobic002G079700 Sobic001G178500--Sobic001G387800 Sobic001G060300 Sobic001G060300 Sobic001G178500--Sobic001G060300 Sobic001G178500--Sobic010G040900 Sobic001G178500--Sobic007G119600 Sobic001G178500--Sobic003G135600 Sobic001G178500--Sobic009G191400 Sobic007G171500 Sobic007G171500 Sobic001G178500--Sobic007G171500 Sobic001G178500--Sobic001G443200 Sobic007G117800--Sobic003G148900 Sobic007G117800--Sobic001G443200 Sobic007G117800--Sobic002G401700 Sobic007G117800--Sobic003G276100 Sobic007G117800--Sobic007G012900 Sobic005G184200 Sobic005G184200 Sobic007G117800--Sobic005G184200 Sobic004G159000 Sobic004G159000 Sobic007G117800--Sobic004G159000 Sobic003G200600 Sobic003G200600 Sobic007G117800--Sobic003G200600 Sobic007G117800--Sobic002G262200
Octagon: transcription factors


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