Gene annotation
Transcriptome id Sobic.010G040900.1
Synonym Sb10g003610
Functional annotation trafficking protein particle complex subunit 4, putative, expressed
UniProt C5Z4B0
Pfam PF04628
Panther DB PTHR23249
NCBI CDD KOG3369; Transport protein particle (TRAPP) complex subunit
KEGG Orthology -
Gene Ontology GO:0006888; endoplasmic reticulum to Golgi vesicle-mediated transport GO:0005622intracellular GO:0005801cis-Golgi network


Orthologs (automatic annotation)
TAIR AT5G02280 : SNARE-like superfamily protein
RAP-DB (Rice) LOC_Os07g27150.2 : trafficking protein particle complex subunit 4, putative, expressed
MaizeGDB (Corn) Zm00025a041534
Brachypodium KQK20498 , KQK20499
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.010G040900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
2 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
3 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
4 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
5 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19
6 Sobic.006G126000 26S proteasome non-ATPase regulatory subunit 6, putative, expressed K03037: PSMD6, 26S proteasome regulatory subunit N7
7 Sobic.003G261800 expressed protein -
8 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
9 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
10 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
11 Sobic.008G110500 UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed K07432: beta-1,4-N-acetylglucosaminyltransferase
12 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
13 Sobic.003G276100 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
14 Sobic.008G102600 expressed protein -
15 Sobic.002G079700 ribosomal protein L22, putative, expressed K02890: RP-L22, MRPL22, large subunit ribosomal protein L22
16 Sobic.007G171500 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed K00413: CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit
17 Sobic.002G396700 NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed K03942: NADH dehydrogenase (ubiquinone) flavoprotein 1
18 Sobic.004G000100 uridine/cytidine kinase-like 1, putative, expressed K00876: udk, uridine kinase
19 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
20 Sobic.007G012900 50S ribosomal protein L19, chloroplast precursor, putative, expressed -


Gene co-expression network
sample Sobic010G040900 Sobic010G040900 Sobic004G039400 Sobic004G039400 Sobic010G040900--Sobic004G039400 Sobic001G443200 Sobic001G443200 Sobic010G040900--Sobic001G443200 Sobic009G191400 Sobic009G191400 Sobic010G040900--Sobic009G191400 Sobic001G008100 Sobic001G008100 Sobic010G040900--Sobic001G008100 Sobic001G178500 Sobic001G178500 Sobic010G040900--Sobic001G178500 Sobic006G126000 Sobic006G126000 Sobic010G040900--Sobic006G126000 Sobic003G261800 Sobic003G261800 Sobic010G040900--Sobic003G261800 Sobic003G135600 Sobic003G135600 Sobic010G040900--Sobic003G135600 Sobic004G344800 Sobic004G344800 Sobic010G040900--Sobic004G344800 Sobic004G039400--Sobic001G008100 Sobic001G073600 Sobic001G073600 Sobic004G039400--Sobic001G073600 Sobic004G039400--Sobic010G040900 Sobic004G039400--Sobic001G443200 Sobic002G262200 Sobic002G262200 Sobic004G039400--Sobic002G262200 Sobic004G039400--Sobic009G191400 Sobic004G039400--Sobic004G344800 Sobic001G387200 Sobic001G387200 Sobic004G039400--Sobic001G387200 Sobic002G079700 Sobic002G079700 Sobic004G039400--Sobic002G079700 Sobic008G102600 Sobic008G102600 Sobic001G443200--Sobic008G102600 Sobic004G000100 Sobic004G000100 Sobic001G443200--Sobic004G000100 Sobic001G443200--Sobic004G039400 Sobic001G112400 Sobic001G112400 Sobic001G443200--Sobic001G112400 Sobic001G443200--Sobic004G344800 Sobic002G141700 Sobic002G141700 Sobic001G443200--Sobic002G141700 Sobic001G443200--Sobic010G040900 Sobic001G443200--Sobic001G073600 Sobic001G443200--Sobic002G262200 Sobic009G191400--Sobic001G073600 Sobic009G224400 Sobic009G224400 Sobic009G191400--Sobic009G224400 Sobic004G347600 Sobic004G347600 Sobic009G191400--Sobic004G347600 Sobic007G119600 Sobic007G119600 Sobic009G191400--Sobic007G119600 Sobic009G191400--Sobic003G135600 Sobic009G191400--Sobic004G344800 Sobic009G191400--Sobic002G262200 Sobic001G458800 Sobic001G458800 Sobic009G191400--Sobic001G458800 Sobic002G396700 Sobic002G396700 Sobic009G191400--Sobic002G396700 Sobic001G008100--Sobic004G039400 Sobic006G041800 Sobic006G041800 Sobic001G008100--Sobic006G041800 Sobic001G465400 Sobic001G465400 Sobic001G008100--Sobic001G465400 Sobic001G008100--Sobic010G040900 Sobic001G387800 Sobic001G387800 Sobic001G008100--Sobic001G387800 Sobic003G276100 Sobic003G276100 Sobic001G008100--Sobic003G276100 Sobic001G008100--Sobic002G079700 Sobic001G008100--Sobic009G191400 Sobic002G276800 Sobic002G276800 Sobic001G008100--Sobic002G276800 Sobic001G178500--Sobic002G079700 Sobic001G178500--Sobic001G387800 Sobic001G060300 Sobic001G060300 Sobic001G178500--Sobic001G060300 Sobic001G178500--Sobic010G040900 Sobic001G178500--Sobic007G119600 Sobic001G178500--Sobic003G135600 Sobic001G178500--Sobic009G191400 Sobic007G171500 Sobic007G171500 Sobic001G178500--Sobic007G171500 Sobic001G178500--Sobic001G443200 Sobic001G031900 Sobic001G031900 Sobic006G126000--Sobic001G031900 Sobic006G126000--Sobic010G040900 Sobic003G330500 Sobic003G330500 Sobic006G126000--Sobic003G330500 Sobic007G176200 Sobic007G176200 Sobic006G126000--Sobic007G176200 Sobic006G126000--Sobic003G135600 Sobic010G008800 Sobic010G008800 Sobic006G126000--Sobic010G008800 Sobic001G350600 Sobic001G350600 Sobic006G126000--Sobic001G350600 Sobic003G152900 Sobic003G152900 Sobic006G126000--Sobic003G152900 Sobic004G030000 Sobic004G030000 Sobic006G126000--Sobic004G030000 Sobic003G261800--Sobic002G141700 Sobic003G261800--Sobic001G443200 Sobic003G261800--Sobic004G347600 Sobic003G261800--Sobic010G040900 Sobic003G261800--Sobic009G191400 Sobic003G261800--Sobic001G112400 Sobic003G261800--Sobic001G387800 Sobic003G261800--Sobic004G000100 Sobic003G261800--Sobic004G344800 Sobic004G155100 Sobic004G155100 Sobic003G135600--Sobic004G155100 Sobic002G395000 Sobic002G395000 Sobic003G135600--Sobic002G395000 Sobic003G135600--Sobic001G073600 Sobic003G135600--Sobic009G224400 Sobic002G309700 Sobic002G309700 Sobic003G135600--Sobic002G309700 Sobic003G135600--Sobic009G191400 Sobic001G181500 Sobic001G181500 Sobic003G135600--Sobic001G181500 Sobic009G211900 Sobic009G211900 Sobic003G135600--Sobic009G211900 Sobic004G260200 Sobic004G260200 Sobic003G135600--Sobic004G260200 Sobic004G344800--Sobic001G073600 Sobic004G344800--Sobic003G135600 Sobic004G159000 Sobic004G159000 Sobic004G344800--Sobic004G159000 Sobic001G035400 Sobic001G035400 Sobic004G344800--Sobic001G035400 Sobic004G344800--Sobic009G191400 Sobic004G344800--Sobic004G030000 Sobic004G344800--Sobic002G262200 Sobic004G344800--Sobic002G396700 Sobic004G344800--Sobic001G031900
Octagon: transcription factors


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