Gene annotation
Transcriptome id Sobic.007G012900.1,Sobic.007G012900.2
Synonym Sb07g001190
Functional annotation 50S ribosomal protein L19, chloroplast precursor, putative, expressed
UniProt C5YLY2
Pfam PF01245
Panther DB PTHR15680 PTHR15680:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT4G11630 : Ribosomal protein L19 family protein
RAP-DB (Rice) LOC_Os02g11030.1 : 50S ribosomal protein L19, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a040216 , Zm00025a030286
Brachypodium KQK17811
Barley HORVU4Hr1G043660.7 , HORVU4Hr1G043660.6 , HORVU4Hr1G043660.5 , HORVU4Hr1G043660.4 , HORVU4Hr1G043660.3 , HORVU4Hr1G043660.2 , HORVU4Hr1G043660.1 , HORVU7Hr1G085020.4 , HORVU7Hr1G085020.5 , HORVU7Hr1G085020.6 , HORVU7Hr1G085020.7 , HORVU7Hr1G085020.2
Wheat TraesCS7D02G352000 , TraesCS7D02G352000 , TraesCS4D02G097200 , TraesCS7A02G370900 , TraesCS7A02G370900 , TraesCS4A02G215600 , TraesCS4A02G215600 , TraesCS4B02G100600 , TraesCS4B02G100600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G012900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G181500 expressed protein -
2 Sobic.003G276100 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
3 Sobic.002G401700 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
4 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
5 Sobic.006G041800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
6 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
7 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
8 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
9 Sobic.002G079700 ribosomal protein L22, putative, expressed K02890: RP-L22, MRPL22, large subunit ribosomal protein L22
10 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19
11 Sobic.007G117800 cytochrome b561, putative, expressed K08360: cytochrome b-561
12 Sobic.006G095200 signal peptidase complex subunit 2, putative, expressed K12947: SPCS2, signal peptidase complex subunit 2
13 Sobic.001G050400 expressed protein -
14 Sobic.002G186500 UPF0041 domain containing protein, putative, expressed -
15 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
16 Sobic.010G007400 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2
17 Sobic.002G027800 mitochondrial 60S ribosomal protein L5, putative, expressed -
18 Sobic.002G262200 expressed protein -
19 Sobic.010G040900 trafficking protein particle complex subunit 4, putative, expressed -
20 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1


Gene co-expression network
sample Sobic007G012900 Sobic007G012900 Sobic001G181500 Sobic001G181500 Sobic007G012900--Sobic001G181500 Sobic003G276100 Sobic003G276100 Sobic007G012900--Sobic003G276100 Sobic002G401700 Sobic002G401700 Sobic007G012900--Sobic002G401700 Sobic001G008100 Sobic001G008100 Sobic007G012900--Sobic001G008100 Sobic006G041800 Sobic006G041800 Sobic007G012900--Sobic006G041800 Sobic003G148900 Sobic003G148900 Sobic007G012900--Sobic003G148900 Sobic003G135600 Sobic003G135600 Sobic007G012900--Sobic003G135600 Sobic009G191400 Sobic009G191400 Sobic007G012900--Sobic009G191400 Sobic002G079700 Sobic002G079700 Sobic007G012900--Sobic002G079700 Sobic009G215300 Sobic009G215300 Sobic001G181500--Sobic009G215300 Sobic009G211900 Sobic009G211900 Sobic001G181500--Sobic009G211900 Sobic001G181500--Sobic003G135600 Sobic002G309700 Sobic002G309700 Sobic001G181500--Sobic002G309700 Sobic001G206700 Sobic001G206700 Sobic001G181500--Sobic001G206700 Sobic004G030000 Sobic004G030000 Sobic001G181500--Sobic004G030000 Sobic001G282500 Sobic001G282500 Sobic001G181500--Sobic001G282500 Sobic001G181500--Sobic007G012900 Sobic004G260200 Sobic004G260200 Sobic001G181500--Sobic004G260200 Sobic003G276100--Sobic007G012900 Sobic003G276100--Sobic006G041800 Sobic003G276100--Sobic001G008100 Sobic007G119600 Sobic007G119600 Sobic003G276100--Sobic007G119600 Sobic001G443200 Sobic001G443200 Sobic003G276100--Sobic001G443200 Sobic003G276100--Sobic009G191400 Sobic001G387200 Sobic001G387200 Sobic003G276100--Sobic001G387200 Sobic001G178500 Sobic001G178500 Sobic003G276100--Sobic001G178500 Sobic007G117800 Sobic007G117800 Sobic003G276100--Sobic007G117800 Sobic010G007400 Sobic010G007400 Sobic002G401700--Sobic010G007400 Sobic002G401700--Sobic007G012900 Sobic004G159000 Sobic004G159000 Sobic002G401700--Sobic004G159000 Sobic002G401700--Sobic007G117800 Sobic001G050400 Sobic001G050400 Sobic002G401700--Sobic001G050400 Sobic003G116600 Sobic003G116600 Sobic002G401700--Sobic003G116600 Sobic008G108500 Sobic008G108500 Sobic002G401700--Sobic008G108500 Sobic002G276800 Sobic002G276800 Sobic002G401700--Sobic002G276800 Sobic001G378200 Sobic001G378200 Sobic002G401700--Sobic001G378200 Sobic004G039400 Sobic004G039400 Sobic001G008100--Sobic004G039400 Sobic001G008100--Sobic006G041800 Sobic001G465400 Sobic001G465400 Sobic001G008100--Sobic001G465400 Sobic010G040900 Sobic010G040900 Sobic001G008100--Sobic010G040900 Sobic001G387800 Sobic001G387800 Sobic001G008100--Sobic001G387800 Sobic001G008100--Sobic003G276100 Sobic001G008100--Sobic002G079700 Sobic001G008100--Sobic009G191400 Sobic001G008100--Sobic002G276800 Sobic006G041800--Sobic007G119600 Sobic006G041800--Sobic001G008100 Sobic006G041800--Sobic003G276100 Sobic001G485300 Sobic001G485300 Sobic006G041800--Sobic001G485300 Sobic006G041800--Sobic002G276800 Sobic006G041800--Sobic007G012900 Sobic003G388700 Sobic003G388700 Sobic006G041800--Sobic003G388700 Sobic006G041800--Sobic001G387800 Sobic002G255400 Sobic002G255400 Sobic006G041800--Sobic002G255400 Sobic003G200600 Sobic003G200600 Sobic003G148900--Sobic003G200600 Sobic003G148900--Sobic007G117800 Sobic002G027800 Sobic002G027800 Sobic003G148900--Sobic002G027800 Sobic003G148900--Sobic007G012900 Sobic008G110500 Sobic008G110500 Sobic003G148900--Sobic008G110500 Sobic002G423800 Sobic002G423800 Sobic003G148900--Sobic002G423800 Sobic001G421400 Sobic001G421400 Sobic003G148900--Sobic001G421400 Sobic003G128300 Sobic003G128300 Sobic003G148900--Sobic003G128300 Sobic003G224300 Sobic003G224300 Sobic003G148900--Sobic003G224300 Sobic004G155100 Sobic004G155100 Sobic003G135600--Sobic004G155100 Sobic002G395000 Sobic002G395000 Sobic003G135600--Sobic002G395000 Sobic001G073600 Sobic001G073600 Sobic003G135600--Sobic001G073600 Sobic009G224400 Sobic009G224400 Sobic003G135600--Sobic009G224400 Sobic003G135600--Sobic002G309700 Sobic003G135600--Sobic009G191400 Sobic003G135600--Sobic001G181500 Sobic003G135600--Sobic009G211900 Sobic003G135600--Sobic004G260200 Sobic009G191400--Sobic001G073600 Sobic009G191400--Sobic009G224400 Sobic004G347600 Sobic004G347600 Sobic009G191400--Sobic004G347600 Sobic009G191400--Sobic007G119600 Sobic009G191400--Sobic003G135600 Sobic004G344800 Sobic004G344800 Sobic009G191400--Sobic004G344800 Sobic002G262200 Sobic002G262200 Sobic009G191400--Sobic002G262200 Sobic001G458800 Sobic001G458800 Sobic009G191400--Sobic001G458800 Sobic002G396700 Sobic002G396700 Sobic009G191400--Sobic002G396700 Sobic002G079700--Sobic001G178500 Sobic002G079700--Sobic003G135600 Sobic002G079700--Sobic004G039400 Sobic002G079700--Sobic001G008100 Sobic002G079700--Sobic009G191400 Sobic004G045300 Sobic004G045300 Sobic002G079700--Sobic004G045300 Sobic002G079700--Sobic009G224400 Sobic002G079700--Sobic003G388700 Sobic002G079700--Sobic001G073600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.