Gene annotation
Transcriptome id Sobic.002G027800.1,Sobic.002G027800.2
Synonym Sb02g002480
Functional annotation mitochondrial 60S ribosomal protein L5, putative, expressed
UniProt A0A1B6Q8W3 , A0A1B6Q8X9
Pfam -
Panther DB PTHR11994 PTHR11994:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G07725 : Ribosomal L5P family protein
RAP-DB (Rice) LOC_Os09g08890.1 : mitochondrial 60S ribosomal protein L5, putative, expressed
MaizeGDB (Corn) Zm00025a044969
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G027800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
2 Sobic.007G012900 50S ribosomal protein L19, chloroplast precursor, putative, expressed -
3 Sobic.008G110500 UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed K07432: beta-1,4-N-acetylglucosaminyltransferase
4 Sobic.008G102600 expressed protein -
5 Sobic.010G040900 trafficking protein particle complex subunit 4, putative, expressed -
6 Sobic.003G200600 CBS domain containing membrane protein, putative, expressed -
7 Sobic.003G196200 elongation factor TS family protein, expressed -
8 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
9 Sobic.001G421400 expressed protein -
10 Sobic.004G186100 expressed protein -
11 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
12 Sobic.006G143500 expressed protein -
13 Sobic.009G112900 expressed protein K18170: LYRM7, complex III assembly factor LYRM7
14 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
15 Sobic.004G030000 mitochondrial ATP synthase precursor, putative, expressed -
16 Sobic.002G079700 ribosomal protein L22, putative, expressed K02890: RP-L22, MRPL22, large subunit ribosomal protein L22
17 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19
18 Sobic.009G206600 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
19 Sobic.004G033500 expressed protein -
20 Sobic.004G045300 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e


Gene co-expression network
sample Sobic002G027800 Sobic002G027800 Sobic003G148900 Sobic003G148900 Sobic002G027800--Sobic003G148900 Sobic007G012900 Sobic007G012900 Sobic002G027800--Sobic007G012900 Sobic008G110500 Sobic008G110500 Sobic002G027800--Sobic008G110500 Sobic008G102600 Sobic008G102600 Sobic002G027800--Sobic008G102600 Sobic010G040900 Sobic010G040900 Sobic002G027800--Sobic010G040900 Sobic003G200600 Sobic003G200600 Sobic002G027800--Sobic003G200600 Sobic003G196200 Sobic003G196200 Sobic002G027800--Sobic003G196200 Sobic001G387800 Sobic001G387800 Sobic002G027800--Sobic001G387800 Sobic001G421400 Sobic001G421400 Sobic002G027800--Sobic001G421400 Sobic003G148900--Sobic003G200600 Sobic007G117800 Sobic007G117800 Sobic003G148900--Sobic007G117800 Sobic003G148900--Sobic002G027800 Sobic003G148900--Sobic007G012900 Sobic003G148900--Sobic008G110500 Sobic002G423800 Sobic002G423800 Sobic003G148900--Sobic002G423800 Sobic003G148900--Sobic001G421400 Sobic003G128300 Sobic003G128300 Sobic003G148900--Sobic003G128300 Sobic003G224300 Sobic003G224300 Sobic003G148900--Sobic003G224300 Sobic001G181500 Sobic001G181500 Sobic007G012900--Sobic001G181500 Sobic003G276100 Sobic003G276100 Sobic007G012900--Sobic003G276100 Sobic002G401700 Sobic002G401700 Sobic007G012900--Sobic002G401700 Sobic001G008100 Sobic001G008100 Sobic007G012900--Sobic001G008100 Sobic006G041800 Sobic006G041800 Sobic007G012900--Sobic006G041800 Sobic007G012900--Sobic003G148900 Sobic003G135600 Sobic003G135600 Sobic007G012900--Sobic003G135600 Sobic009G191400 Sobic009G191400 Sobic007G012900--Sobic009G191400 Sobic002G079700 Sobic002G079700 Sobic007G012900--Sobic002G079700 Sobic001G443200 Sobic001G443200 Sobic008G110500--Sobic001G443200 Sobic008G110500--Sobic003G148900 Sobic008G110500--Sobic008G102600 Sobic008G110500--Sobic001G387800 Sobic008G145100 Sobic008G145100 Sobic008G110500--Sobic008G145100 Sobic008G110500--Sobic010G040900 Sobic005G184200 Sobic005G184200 Sobic008G110500--Sobic005G184200 Sobic001G542900 Sobic001G542900 Sobic008G110500--Sobic001G542900 Sobic008G110500--Sobic003G196200 Sobic008G102600--Sobic001G443200 Sobic009G112900 Sobic009G112900 Sobic008G102600--Sobic009G112900 Sobic008G102600--Sobic003G196200 Sobic004G000100 Sobic004G000100 Sobic008G102600--Sobic004G000100 Sobic004G045300 Sobic004G045300 Sobic008G102600--Sobic004G045300 Sobic008G102600--Sobic008G110500 Sobic008G102600--Sobic001G387800 Sobic001G112400 Sobic001G112400 Sobic008G102600--Sobic001G112400 Sobic004G039400 Sobic004G039400 Sobic008G102600--Sobic004G039400 Sobic010G040900--Sobic004G039400 Sobic010G040900--Sobic001G443200 Sobic010G040900--Sobic009G191400 Sobic010G040900--Sobic001G008100 Sobic001G178500 Sobic001G178500 Sobic010G040900--Sobic001G178500 Sobic006G126000 Sobic006G126000 Sobic010G040900--Sobic006G126000 Sobic003G261800 Sobic003G261800 Sobic010G040900--Sobic003G261800 Sobic010G040900--Sobic003G135600 Sobic004G344800 Sobic004G344800 Sobic010G040900--Sobic004G344800 Sobic003G200600--Sobic003G148900 Sobic003G200600--Sobic001G421400 Sobic003G200600--Sobic007G117800 Sobic003G200600--Sobic002G401700 Sobic003G200600--Sobic001G112400 Sobic001G313500 Sobic001G313500 Sobic003G200600--Sobic001G313500 Sobic003G200600--Sobic007G012900 Sobic001G378200 Sobic001G378200 Sobic003G200600--Sobic001G378200 Sobic003G200600--Sobic005G184200 Sobic003G196200--Sobic001G387800 Sobic003G196200--Sobic008G102600 Sobic001G077900 Sobic001G077900 Sobic003G196200--Sobic001G077900 Sobic003G196200--Sobic004G045300 Sobic001G161700 Sobic001G161700 Sobic003G196200--Sobic001G161700 Sobic003G196200--Sobic001G178500 Sobic003G196200--Sobic008G110500 Sobic003G196200--Sobic004G000100 Sobic001G473800 Sobic001G473800 Sobic003G196200--Sobic001G473800 Sobic001G387800--Sobic003G196200 Sobic001G387800--Sobic001G178500 Sobic001G387800--Sobic001G008100 Sobic001G387800--Sobic004G039400 Sobic007G119600 Sobic007G119600 Sobic001G387800--Sobic007G119600 Sobic001G387800--Sobic009G191400 Sobic001G387800--Sobic002G079700 Sobic007G206300 Sobic007G206300 Sobic001G387800--Sobic007G206300 Sobic001G465400 Sobic001G465400 Sobic001G387800--Sobic001G465400 Sobic001G421400--Sobic001G313500 Sobic010G243400 Sobic010G243400 Sobic001G421400--Sobic010G243400 Sobic003G382900 Sobic003G382900 Sobic001G421400--Sobic003G382900 Sobic001G161900 Sobic001G161900 Sobic001G421400--Sobic001G161900 Sobic001G421400--Sobic003G200600 Sobic007G056100 Sobic007G056100 Sobic001G421400--Sobic007G056100 Sobic001G512400 Sobic001G512400 Sobic001G421400--Sobic001G512400 Sobic001G421400--Sobic003G148900 Sobic010G261600 Sobic010G261600 Sobic001G421400--Sobic010G261600
Octagon: transcription factors


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