Gene annotation
Transcriptome id Sobic.003G200600.1
Synonym Sb03g026270
Functional annotation CBS domain containing membrane protein, putative, expressed
UniProt C5XPF7
Pfam PF00571
Panther DB PTHR13780 PTHR13780:SF47
NCBI CDD KOG1764; 5'-AMP-activated protein kinase, gamma subunit
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G69800 : Cystathionine beta-synthase (CBS) protein
RAP-DB (Rice) LOC_Os01g40420.1 : CBS domain containing membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a028522
Brachypodium KQK08475 , KQK08474
Barley HORVU2Hr1G032570.5 , HORVU2Hr1G032570.4 , HORVU2Hr1G032570.1 , HORVU2Hr1G032570.3 , HORVU2Hr1G032570.2
Wheat TraesCS2A02G177000 , TraesCS2A02G177000 , TraesCS2B02G203900 , TraesCS2B02G203900 , TraesCS2B02G203900 , TraesCS2D02G185000 , TraesCS2D02G185000
Populus -


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cDNA sequences
Sobic.003G200600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
2 Sobic.001G421400 expressed protein -
3 Sobic.007G117800 cytochrome b561, putative, expressed K08360: cytochrome b-561
4 Sobic.002G401700 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
5 Sobic.001G112400 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed K02258: COX11, cytochrome c oxidase assembly protein subunit 11
6 Sobic.001G313500 tobamovirus multiplication protein, putative, expressed -
7 Sobic.007G012900 50S ribosomal protein L19, chloroplast precursor, putative, expressed -
8 Sobic.001G378200 tetratricopeptide repeat domain containing protein, expressed -
9 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
10 Sobic.004G354301 - K12236: transcriptional repressor NF-X1
11 Sobic.002G027800 mitochondrial 60S ribosomal protein L5, putative, expressed -
12 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
13 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
14 Sobic.001G465400 dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed K00658: DLST, 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)
15 Sobic.006G083100 formyl transferase, putative, expressed K00601: phosphoribosylglycinamide formyltransferase
16 Sobic.001G061200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
17 Sobic.003G193500 CK1_CaseinKinase_1.2 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
18 Sobic.001G511300 expressed protein -
19 Sobic.008G110500 UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed K07432: beta-1,4-N-acetylglucosaminyltransferase
20 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9


Gene co-expression network
sample Sobic003G200600 Sobic003G200600 Sobic003G148900 Sobic003G148900 Sobic003G200600--Sobic003G148900 Sobic001G421400 Sobic001G421400 Sobic003G200600--Sobic001G421400 Sobic007G117800 Sobic007G117800 Sobic003G200600--Sobic007G117800 Sobic002G401700 Sobic002G401700 Sobic003G200600--Sobic002G401700 Sobic001G112400 Sobic001G112400 Sobic003G200600--Sobic001G112400 Sobic001G313500 Sobic001G313500 Sobic003G200600--Sobic001G313500 Sobic007G012900 Sobic007G012900 Sobic003G200600--Sobic007G012900 Sobic001G378200 Sobic001G378200 Sobic003G200600--Sobic001G378200 Sobic005G184200 Sobic005G184200 Sobic003G200600--Sobic005G184200 Sobic003G148900--Sobic003G200600 Sobic003G148900--Sobic007G117800 Sobic002G027800 Sobic002G027800 Sobic003G148900--Sobic002G027800 Sobic003G148900--Sobic007G012900 Sobic008G110500 Sobic008G110500 Sobic003G148900--Sobic008G110500 Sobic002G423800 Sobic002G423800 Sobic003G148900--Sobic002G423800 Sobic003G148900--Sobic001G421400 Sobic003G128300 Sobic003G128300 Sobic003G148900--Sobic003G128300 Sobic003G224300 Sobic003G224300 Sobic003G148900--Sobic003G224300 Sobic001G421400--Sobic001G313500 Sobic010G243400 Sobic010G243400 Sobic001G421400--Sobic010G243400 Sobic003G382900 Sobic003G382900 Sobic001G421400--Sobic003G382900 Sobic001G161900 Sobic001G161900 Sobic001G421400--Sobic001G161900 Sobic001G421400--Sobic003G200600 Sobic007G056100 Sobic007G056100 Sobic001G421400--Sobic007G056100 Sobic001G512400 Sobic001G512400 Sobic001G421400--Sobic001G512400 Sobic001G421400--Sobic003G148900 Sobic010G261600 Sobic010G261600 Sobic001G421400--Sobic010G261600 Sobic007G117800--Sobic003G148900 Sobic001G443200 Sobic001G443200 Sobic007G117800--Sobic001G443200 Sobic007G117800--Sobic002G401700 Sobic003G276100 Sobic003G276100 Sobic007G117800--Sobic003G276100 Sobic007G117800--Sobic007G012900 Sobic007G117800--Sobic005G184200 Sobic004G159000 Sobic004G159000 Sobic007G117800--Sobic004G159000 Sobic007G117800--Sobic003G200600 Sobic002G262200 Sobic002G262200 Sobic007G117800--Sobic002G262200 Sobic010G007400 Sobic010G007400 Sobic002G401700--Sobic010G007400 Sobic002G401700--Sobic007G012900 Sobic002G401700--Sobic004G159000 Sobic002G401700--Sobic007G117800 Sobic001G050400 Sobic001G050400 Sobic002G401700--Sobic001G050400 Sobic003G116600 Sobic003G116600 Sobic002G401700--Sobic003G116600 Sobic008G108500 Sobic008G108500 Sobic002G401700--Sobic008G108500 Sobic002G276800 Sobic002G276800 Sobic002G401700--Sobic002G276800 Sobic002G401700--Sobic001G378200 Sobic001G112400--Sobic002G262200 Sobic001G112400--Sobic001G443200 Sobic001G112400--Sobic005G184200 Sobic001G112400--Sobic001G378200 Sobic004G347600 Sobic004G347600 Sobic001G112400--Sobic004G347600 Sobic004G039400 Sobic004G039400 Sobic001G112400--Sobic004G039400 Sobic004G344800 Sobic004G344800 Sobic001G112400--Sobic004G344800 Sobic002G396700 Sobic002G396700 Sobic001G112400--Sobic002G396700 Sobic001G465400 Sobic001G465400 Sobic001G112400--Sobic001G465400 Sobic001G313500--Sobic001G421400 Sobic001G313500--Sobic001G512400 Sobic001G085900 Sobic001G085900 Sobic001G313500--Sobic001G085900 Sobic002G385900 Sobic002G385900 Sobic001G313500--Sobic002G385900 Sobic001G313500--Sobic001G161900 Sobic010G129600 Sobic010G129600 Sobic001G313500--Sobic010G129600 Sobic009G135600 Sobic009G135600 Sobic001G313500--Sobic009G135600 Sobic001G313500--Sobic010G261600 Sobic004G039300 Sobic004G039300 Sobic001G313500--Sobic004G039300 Sobic001G181500 Sobic001G181500 Sobic007G012900--Sobic001G181500 Sobic007G012900--Sobic003G276100 Sobic007G012900--Sobic002G401700 Sobic001G008100 Sobic001G008100 Sobic007G012900--Sobic001G008100 Sobic006G041800 Sobic006G041800 Sobic007G012900--Sobic006G041800 Sobic007G012900--Sobic003G148900 Sobic003G135600 Sobic003G135600 Sobic007G012900--Sobic003G135600 Sobic009G191400 Sobic009G191400 Sobic007G012900--Sobic009G191400 Sobic002G079700 Sobic002G079700 Sobic007G012900--Sobic002G079700 Sobic001G378200--Sobic001G465400 Sobic001G378200--Sobic001G112400 Sobic006G012700 Sobic006G012700 Sobic001G378200--Sobic006G012700 Sobic004G078700 Sobic004G078700 Sobic001G378200--Sobic004G078700 Sobic001G378200--Sobic004G039400 Sobic001G378200--Sobic001G443200 Sobic001G378200--Sobic001G008100 Sobic001G378200--Sobic002G262200 Sobic005G207400 Sobic005G207400 Sobic001G378200--Sobic005G207400 Sobic005G184200--Sobic001G112400 Sobic005G184200--Sobic003G116600 Sobic005G184200--Sobic001G443200 Sobic003G217100 Sobic003G217100 Sobic005G184200--Sobic003G217100 Sobic001G332300 Sobic001G332300 Sobic005G184200--Sobic001G332300 Sobic005G184200--Sobic004G344800 Sobic002G090700 Sobic002G090700 Sobic005G184200--Sobic002G090700 Sobic005G184200--Sobic001G378200 Sobic005G184200--Sobic008G110500
Octagon: transcription factors


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