Gene annotation
Transcriptome id Sobic.006G083100.2
Synonym Sb06g016970
Functional annotation formyl transferase, putative, expressed
UniProt A0A1Z5RCY7
Pfam PF00551
Panther DB PTHR10520 PTHR10520:SF9
NCBI CDD KOG3076; 5'-phosphoribosylglycinamide formyltransferase
KEGG Orthology K00601; phosphoribosylglycinamide formyltransferase
Gene Ontology GO:0016742; hydroxymethyl-, formyl- and related transferase activity GO:0009058biosynthetic process


Orthologs (automatic annotation)
TAIR AT1G31220 : Formyl transferase
RAP-DB (Rice) LOC_Os08g39160.1 : formyl transferase, putative, expressed
MaizeGDB (Corn) Zm00025a011368
Brachypodium KQJ82659 , KQJ82658 , PNT61097 , KQJ82660
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G083100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G332300 expressed protein -
2 Sobic.007G112600 co-chaperone GrpE protein, putative, expressed K03687: molecular chaperone GrpE
3 Sobic.001G211900 methyltransferase, putative, expressed K11437: type I protein arginine methyltransferase
4 Sobic.001G112400 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed K02258: COX11, cytochrome c oxidase assembly protein subunit 11
5 Sobic.004G025300 vesicle transport v-SNARE protein, putative, expressed K08495: GOSR1, golgi SNAP receptor complex member 1
6 Sobic.001G358500 GA20734-PA, putative, expressed -
7 Sobic.001G378200 tetratricopeptide repeat domain containing protein, expressed -
8 Sobic.001G099900 WD domain, G-beta repeat domain containing protein, expressed K14548: UTP4, U3 small nucleolar RNA-associated protein 4
9 Sobic.006G142400 suppressor of stem-loop protein 1, putative, expressed K03142: TFIIH2, GTF2H2, transcription initiation factor TFIIH subunit 2
10 Sobic.001G428800 vacuolar sorting protein, putative, expressed -
11 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
12 Sobic.001G404200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17790: mitochondrial import inner membrane translocase subunit TIM22
13 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
14 Sobic.001G161700 vesicle-fusing ATPase, putative, expressed K06027: NSF, vesicle-fusing ATPase
15 Sobic.003G113400 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
16 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
17 Sobic.008G110500 UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed K07432: beta-1,4-N-acetylglucosaminyltransferase
18 Sobic.001G465400 dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed K00658: DLST, 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)
19 Sobic.009G077600 glycosyl hydrolase family 47 domain contain protein, expressed K01230: MAN1A_C, mannosyl-oligosaccharide alpha-1,2-mannosidase
20 Sobic.003G200600 CBS domain containing membrane protein, putative, expressed -


Gene co-expression network
sample Sobic006G083100 Sobic006G083100 Sobic001G332300 Sobic001G332300 Sobic006G083100--Sobic001G332300 Sobic007G112600 Sobic007G112600 Sobic006G083100--Sobic007G112600 Sobic001G211900 Sobic001G211900 Sobic006G083100--Sobic001G211900 Sobic001G112400 Sobic001G112400 Sobic006G083100--Sobic001G112400 Sobic004G025300 Sobic004G025300 Sobic006G083100--Sobic004G025300 Sobic001G358500 Sobic001G358500 Sobic006G083100--Sobic001G358500 Sobic001G378200 Sobic001G378200 Sobic006G083100--Sobic001G378200 Sobic001G099900 Sobic001G099900 Sobic006G083100--Sobic001G099900 Sobic006G142400 Sobic006G142400 Sobic006G083100--Sobic006G142400 Sobic005G184200 Sobic005G184200 Sobic001G332300--Sobic005G184200 Sobic001G332300--Sobic001G378200 Sobic001G332300--Sobic004G025300 Sobic001G332300--Sobic001G112400 Sobic001G404200 Sobic001G404200 Sobic001G332300--Sobic001G404200 Sobic001G332300--Sobic001G358500 Sobic001G332300--Sobic006G083100 Sobic003G374000 Sobic003G374000 Sobic001G332300--Sobic003G374000 Sobic002G136400 Sobic002G136400 Sobic001G332300--Sobic002G136400 Sobic001G015400 Sobic001G015400 Sobic007G112600--Sobic001G015400 Sobic003G146600 Sobic003G146600 Sobic007G112600--Sobic003G146600 Sobic002G150700 Sobic002G150700 Sobic007G112600--Sobic002G150700 Sobic004G208500 Sobic004G208500 Sobic007G112600--Sobic004G208500 Sobic001G145400 Sobic001G145400 Sobic007G112600--Sobic001G145400 Sobic010G223300 Sobic010G223300 Sobic007G112600--Sobic010G223300 Sobic001G471000 Sobic001G471000 Sobic007G112600--Sobic001G471000 Sobic008G103300 Sobic008G103300 Sobic007G112600--Sobic008G103300 Sobic007G112600--Sobic006G083100 Sobic001G049400 Sobic001G049400 Sobic001G211900--Sobic001G049400 Sobic010G223400 Sobic010G223400 Sobic001G211900--Sobic010G223400 Sobic001G428800 Sobic001G428800 Sobic001G211900--Sobic001G428800 Sobic001G467100 Sobic001G467100 Sobic001G211900--Sobic001G467100 Sobic001G211900--Sobic001G099900 Sobic001G211900--Sobic001G358500 Sobic001G449900 Sobic001G449900 Sobic001G211900--Sobic001G449900 Sobic010G230600 Sobic010G230600 Sobic001G211900--Sobic010G230600 Sobic001G211900--Sobic010G223300 Sobic002G262200 Sobic002G262200 Sobic001G112400--Sobic002G262200 Sobic001G443200 Sobic001G443200 Sobic001G112400--Sobic001G443200 Sobic001G112400--Sobic005G184200 Sobic001G112400--Sobic001G378200 Sobic004G347600 Sobic004G347600 Sobic001G112400--Sobic004G347600 Sobic004G039400 Sobic004G039400 Sobic001G112400--Sobic004G039400 Sobic004G344800 Sobic004G344800 Sobic001G112400--Sobic004G344800 Sobic002G396700 Sobic002G396700 Sobic001G112400--Sobic002G396700 Sobic001G465400 Sobic001G465400 Sobic001G112400--Sobic001G465400 Sobic004G025300--Sobic001G332300 Sobic004G025300--Sobic005G184200 Sobic004G207900 Sobic004G207900 Sobic004G025300--Sobic004G207900 Sobic008G110500 Sobic008G110500 Sobic004G025300--Sobic008G110500 Sobic004G025300--Sobic001G378200 Sobic004G025300--Sobic006G083100 Sobic001G451901 Sobic001G451901 Sobic004G025300--Sobic001G451901 Sobic005G207400 Sobic005G207400 Sobic004G025300--Sobic005G207400 Sobic001G408100 Sobic001G408100 Sobic004G025300--Sobic001G408100 Sobic001G358500--Sobic001G428800 Sobic010G192600 Sobic010G192600 Sobic001G358500--Sobic010G192600 Sobic008G018500 Sobic008G018500 Sobic001G358500--Sobic008G018500 Sobic008G085700 Sobic008G085700 Sobic001G358500--Sobic008G085700 Sobic001G358500--Sobic001G467100 Sobic003G182300 Sobic003G182300 Sobic001G358500--Sobic003G182300 Sobic006G039400 Sobic006G039400 Sobic001G358500--Sobic006G039400 Sobic001G358500--Sobic001G049400 Sobic001G358500--Sobic001G211900 Sobic001G378200--Sobic001G465400 Sobic001G378200--Sobic001G112400 Sobic006G012700 Sobic006G012700 Sobic001G378200--Sobic006G012700 Sobic004G078700 Sobic004G078700 Sobic001G378200--Sobic004G078700 Sobic001G378200--Sobic004G039400 Sobic001G378200--Sobic001G443200 Sobic001G008100 Sobic001G008100 Sobic001G378200--Sobic001G008100 Sobic001G378200--Sobic002G262200 Sobic001G378200--Sobic005G207400 Sobic001G099900--Sobic004G208500 Sobic001G099900--Sobic001G015400 Sobic001G099900--Sobic001G467100 Sobic001G099900--Sobic002G150700 Sobic001G099900--Sobic003G146600 Sobic001G474400 Sobic001G474400 Sobic001G099900--Sobic001G474400 Sobic001G099900--Sobic001G428800 Sobic001G099900--Sobic006G142400 Sobic001G156900 Sobic001G156900 Sobic001G099900--Sobic001G156900 Sobic003G214300 Sobic003G214300 Sobic006G142400--Sobic003G214300 Sobic006G142400--Sobic001G099900 Sobic001G042200 Sobic001G042200 Sobic006G142400--Sobic001G042200 Sobic010G264000 Sobic010G264000 Sobic006G142400--Sobic010G264000 Sobic007G042900 Sobic007G042900 Sobic006G142400--Sobic007G042900 Sobic009G040800 Sobic009G040800 Sobic006G142400--Sobic009G040800 Sobic006G142400--Sobic002G150700 Sobic001G012900 Sobic001G012900 Sobic006G142400--Sobic001G012900 Sobic004G084500 Sobic004G084500 Sobic006G142400--Sobic004G084500
Octagon: transcription factors


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