Gene annotation
Transcriptome id Sobic.006G142400.1
Synonym ATGTF2H2, Sb06g022140, GTF2H2
Functional annotation suppressor of stem-loop protein 1, putative, expressed
UniProt A0A097PR45 , C5YBY0
Pfam PF13519 PF07975
Panther DB PTHR12695 PTHR12695:SF2
NCBI CDD -
KEGG Orthology K03142; TFIIH2, GTF2H2, transcription initiation factor TFIIH subunit 2
Gene Ontology GO:0008270; zinc ion binding GO:0006281DNA repair GO:0006351transcription, DNA-templated GO:0006289nucleotide-excision repair GO:0000439transcription factor TFIIH core complex


Orthologs (automatic annotation)
TAIR AT1G05055 : general transcription factor II H2
RAP-DB (Rice) LOC_Os04g42990.1 : suppressor of stem-loop protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a010731
Brachypodium PNT61447 , PNT61446 , KQJ83495 , KQJ83496
Barley HORVU2Hr1G088140.1 , HORVU2Hr1G088140.3 , HORVU2Hr1G088140.2 , HORVU2Hr1G088140.4
Wheat TraesCS2D02G362100 , TraesCS2B02G382600 , TraesCS2A02G364200
Populus -


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cDNA sequences
Sobic.006G142400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G214300 expressed protein -
2 Sobic.001G099900 WD domain, G-beta repeat domain containing protein, expressed K14548: UTP4, U3 small nucleolar RNA-associated protein 4
3 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
4 Sobic.010G264000 expressed protein(PubMedID : 28640841)@expressed protein -
5 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
6 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
7 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
8 Sobic.001G012900 brefeldin A-sensitive Golgi protein-like, putative, expressed -
9 Sobic.004G084500 GPI-anchor transamidase precursor, putative, expressed K05290: GPI-anchor transamidase subunit K
10 Sobic.008G098600 DNA-directed RNA polymerase III subunit RPC9, putative, expressed -
11 Sobic.K004100 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.002G131400 GPI mannosyltransferase 1, putative, expressed K05284: GPI mannosyltransferase 1 subunit M
13 Sobic.001G471000 RNase L inhibitor protein-related, putative, expressed K09140: pre-rRNA-processing protein TSR3
14 Sobic.006G091000 hydrolase, alpha/beta fold family domain containing protein, expressed K13617: protein phosphatase methylesterase 1
15 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
16 Sobic.003G113400 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
17 Sobic.010G074900 G protein coupled receptor, putative, expressed -
18 Sobic.001G193100 expressed protein -
19 Sobic.001G061200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
20 Sobic.009G199500 ribosomal protein L27, putative, expressed K02899: RP-L27, MRPL27, large subunit ribosomal protein L27


Gene co-expression network
sample Sobic006G142400 Sobic006G142400 Sobic003G214300 Sobic003G214300 Sobic006G142400--Sobic003G214300 Sobic001G099900 Sobic001G099900 Sobic006G142400--Sobic001G099900 Sobic001G042200 Sobic001G042200 Sobic006G142400--Sobic001G042200 Sobic010G264000 Sobic010G264000 Sobic006G142400--Sobic010G264000 Sobic007G042900 Sobic007G042900 Sobic006G142400--Sobic007G042900 Sobic009G040800 Sobic009G040800 Sobic006G142400--Sobic009G040800 Sobic002G150700 Sobic002G150700 Sobic006G142400--Sobic002G150700 Sobic001G012900 Sobic001G012900 Sobic006G142400--Sobic001G012900 Sobic004G084500 Sobic004G084500 Sobic006G142400--Sobic004G084500 Sobic003G214300--Sobic006G142400 Sobic008G098600 Sobic008G098600 Sobic003G214300--Sobic008G098600 Sobic001G499000 Sobic001G499000 Sobic003G214300--Sobic001G499000 Sobic004G072800 Sobic004G072800 Sobic003G214300--Sobic004G072800 Sobic003G214300--Sobic010G264000 Sobic009G131900 Sobic009G131900 Sobic003G214300--Sobic009G131900 Sobic010G247400 Sobic010G247400 Sobic003G214300--Sobic010G247400 Sobic001G061200 Sobic001G061200 Sobic003G214300--Sobic001G061200 Sobic007G162800 Sobic007G162800 Sobic003G214300--Sobic007G162800 Sobic004G208500 Sobic004G208500 Sobic001G099900--Sobic004G208500 Sobic001G015400 Sobic001G015400 Sobic001G099900--Sobic001G015400 Sobic001G467100 Sobic001G467100 Sobic001G099900--Sobic001G467100 Sobic001G099900--Sobic002G150700 Sobic003G146600 Sobic003G146600 Sobic001G099900--Sobic003G146600 Sobic001G474400 Sobic001G474400 Sobic001G099900--Sobic001G474400 Sobic001G428800 Sobic001G428800 Sobic001G099900--Sobic001G428800 Sobic001G099900--Sobic006G142400 Sobic001G156900 Sobic001G156900 Sobic001G099900--Sobic001G156900 Sobic010G077500 Sobic010G077500 Sobic001G042200--Sobic010G077500 Sobic004G345400 Sobic004G345400 Sobic001G042200--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic001G042200--Sobic007G187600 Sobic008G058800 Sobic008G058800 Sobic001G042200--Sobic008G058800 Sobic007G056500 Sobic007G056500 Sobic001G042200--Sobic007G056500 Sobic003G212900 Sobic003G212900 Sobic001G042200--Sobic003G212900 Sobic001G042200--Sobic007G042900 Sobic009G249700 Sobic009G249700 Sobic001G042200--Sobic009G249700 Sobic006G281700 Sobic006G281700 Sobic001G042200--Sobic006G281700 Sobic006G270600 Sobic006G270600 Sobic010G264000--Sobic006G270600 Sobic008G129600 Sobic008G129600 Sobic010G264000--Sobic008G129600 Sobic008G103300 Sobic008G103300 Sobic010G264000--Sobic008G103300 Sobic010G264000--Sobic001G042200 Sobic010G235200 Sobic010G235200 Sobic010G264000--Sobic010G235200 Sobic003G363700 Sobic003G363700 Sobic010G264000--Sobic003G363700 Sobic003G182300 Sobic003G182300 Sobic010G264000--Sobic003G182300 Sobic001G492200 Sobic001G492200 Sobic010G264000--Sobic001G492200 Sobic010G264000--Sobic006G142400 Sobic007G042900--Sobic004G345400 Sobic007G042900--Sobic009G249700 Sobic007G042900--Sobic001G042200 Sobic005G110499 Sobic005G110499 Sobic007G042900--Sobic005G110499 Sobic010G169900 Sobic010G169900 Sobic007G042900--Sobic010G169900 Sobic007G042900--Sobic003G182300 Sobic003G394200 Sobic003G394200 Sobic007G042900--Sobic003G394200 Sobic006G139100 Sobic006G139100 Sobic007G042900--Sobic006G139100 Sobic001G005600 Sobic001G005600 Sobic007G042900--Sobic001G005600 Sobic010G278600 Sobic010G278600 Sobic009G040800--Sobic010G278600 Sobic006G091000 Sobic006G091000 Sobic009G040800--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic009G040800--Sobic005G040900 Sobic009G129600 Sobic009G129600 Sobic009G040800--Sobic009G129600 Sobic001G335900 Sobic001G335900 Sobic009G040800--Sobic001G335900 Sobic008G149800 Sobic008G149800 Sobic009G040800--Sobic008G149800 Sobic004G246100 Sobic004G246100 Sobic009G040800--Sobic004G246100 Sobic009G040800--Sobic001G042200 Sobic004G353400 Sobic004G353400 Sobic009G040800--Sobic004G353400 Sobic002G408900 Sobic002G408900 Sobic002G150700--Sobic002G408900 Sobic006G002800 Sobic006G002800 Sobic002G150700--Sobic006G002800 Sobic001G455800 Sobic001G455800 Sobic002G150700--Sobic001G455800 Sobic002G150700--Sobic003G146600 Sobic002G150700--Sobic001G099900 Sobic002G150700--Sobic004G208500 Sobic002G398700 Sobic002G398700 Sobic002G150700--Sobic002G398700 Sobic001G145400 Sobic001G145400 Sobic002G150700--Sobic001G145400 Sobic003G304400 Sobic003G304400 Sobic002G150700--Sobic003G304400 Sobic003G293000 Sobic003G293000 Sobic001G012900--Sobic003G293000 Sobic001G193100 Sobic001G193100 Sobic001G012900--Sobic001G193100 Sobic005G059500 Sobic005G059500 Sobic001G012900--Sobic005G059500 Sobic001G161700 Sobic001G161700 Sobic001G012900--Sobic001G161700 Sobic004G060300 Sobic004G060300 Sobic001G012900--Sobic004G060300 Sobic010G223400 Sobic010G223400 Sobic001G012900--Sobic010G223400 Sobic003G346400 Sobic003G346400 Sobic001G012900--Sobic003G346400 Sobic001G335000 Sobic001G335000 Sobic001G012900--Sobic001G335000 Sobic009G122500 Sobic009G122500 Sobic001G012900--Sobic009G122500 Sobic004G084500--Sobic003G394200 Sobic004G084500--Sobic004G060300 Sobic004G084500--Sobic009G122500 Sobic004G084500--Sobic001G193100 Sobic004G084500--Sobic004G345400 Sobic003G398400 Sobic003G398400 Sobic004G084500--Sobic003G398400 Sobic010G074900 Sobic010G074900 Sobic004G084500--Sobic010G074900 Sobic006G128100 Sobic006G128100 Sobic004G084500--Sobic006G128100 Sobic006G224300 Sobic006G224300 Sobic004G084500--Sobic006G224300
Octagon: transcription factors


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