Gene annotation
Transcriptome id Sobic.001G061200.1
Synonym Sb01g005550, ATSEC22, SEC22
Functional annotation 25.3 kDa vesicle transport protein, putative, expressed
UniProt C5WY28
Pfam PF00957 PF13774
Panther DB PTHR21136 PTHR21136:SF89
NCBI CDD KOG0862; Synaptobrevin/VAMP-like protein SEC22
KEGG Orthology K08517; vesicle transport protein SEC22
Gene Ontology GO:0016192; vesicle-mediated transport GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G11890 : Synaptobrevin family protein
RAP-DB (Rice) LOC_Os06g09850.1 : 25.3 kDa vesicle transport protein, putative, expressed
MaizeGDB (Corn) Zm00025a008525 , Zm00025a053833 , Zm00025a052549 , Zm00025a029042
Brachypodium KQK03464 , KQK12808 , KQK12809
Barley HORVU5Hr1G035420.1 , HORVU5Hr1G035420.3 , HORVU5Hr1G035420.2 , HORVU5Hr1G035420.4 , HORVU5Hr1G104020.4 , HORVU5Hr1G104020.2 , HORVU5Hr1G104020.3 , HORVU5Hr1G104020.1 , HORVU5Hr1G039540.4 , HORVU5Hr1G039540.5 , HORVU5Hr1G039540.2 , HORVU5Hr1G039540.3 , HORVU5Hr1G039540.1
Wheat TraesCS3D02G165300 , TraesCS5A02G428800 , TraesCS3B02G184700 , TraesCS3A02G157800 , TraesCS5D02G436900 , TraesCS5B02G430800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G193100 expressed protein -
2 Sobic.007G173700 WD domain, G-beta repeat domain containing protein, expressed -
3 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial
4 Sobic.009G207200 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
5 Sobic.008G129600 glucosidase II beta subunit-like domain containing protein, expressed K10088: protein OS-9
6 Sobic.002G276800 ER lumen protein retaining receptor, putative, expressed -
7 Sobic.002G029300 pleckstrin homology domain-containing protein, putative, expressed -
8 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
9 Sobic.001G023100 ACBP4, putative, expressed -
10 Sobic.003G190600 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
11 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
12 Sobic.008G110500 UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed K07432: beta-1,4-N-acetylglucosaminyltransferase
13 Sobic.003G214300 expressed protein -
14 Sobic.002G357900 expressed protein -
15 Sobic.002G023100 heat shock protein DnaJ, putative, expressed -
16 Sobic.004G000100 uridine/cytidine kinase-like 1, putative, expressed K00876: udk, uridine kinase
17 Sobic.010G223400 expressed protein -
18 Sobic.003G125100 uncharacterized Cys-rich domain containing protein, putative, expressed -
19 Sobic.001G358500 GA20734-PA, putative, expressed -
20 Sobic.010G074900 G protein coupled receptor, putative, expressed -


Gene co-expression network
sample Sobic001G061200 Sobic001G061200 Sobic001G193100 Sobic001G193100 Sobic001G061200--Sobic001G193100 Sobic007G173700 Sobic007G173700 Sobic001G061200--Sobic007G173700 Sobic003G222700 Sobic003G222700 Sobic001G061200--Sobic003G222700 Sobic009G207200 Sobic009G207200 Sobic001G061200--Sobic009G207200 Sobic008G129600 Sobic008G129600 Sobic001G061200--Sobic008G129600 Sobic002G276800 Sobic002G276800 Sobic001G061200--Sobic002G276800 Sobic002G029300 Sobic002G029300 Sobic001G061200--Sobic002G029300 Sobic003G148900 Sobic003G148900 Sobic001G061200--Sobic003G148900 Sobic001G023100 Sobic001G023100 Sobic001G061200--Sobic001G023100 Sobic010G223400 Sobic010G223400 Sobic001G193100--Sobic010G223400 Sobic003G394200 Sobic003G394200 Sobic001G193100--Sobic003G394200 Sobic001G012900 Sobic001G012900 Sobic001G193100--Sobic001G012900 Sobic001G193100--Sobic001G061200 Sobic001G193100--Sobic007G173700 Sobic004G084500 Sobic004G084500 Sobic001G193100--Sobic004G084500 Sobic004G060300 Sobic004G060300 Sobic001G193100--Sobic004G060300 Sobic004G078700 Sobic004G078700 Sobic001G193100--Sobic004G078700 Sobic010G074900 Sobic010G074900 Sobic001G193100--Sobic010G074900 Sobic007G173700--Sobic002G029300 Sobic004G000100 Sobic004G000100 Sobic007G173700--Sobic004G000100 Sobic007G173700--Sobic001G023100 Sobic007G173700--Sobic001G193100 Sobic001G161700 Sobic001G161700 Sobic007G173700--Sobic001G161700 Sobic007G173700--Sobic001G061200 Sobic002G141700 Sobic002G141700 Sobic007G173700--Sobic002G141700 Sobic001G049400 Sobic001G049400 Sobic007G173700--Sobic001G049400 Sobic007G173700--Sobic003G394200 Sobic004G256300 Sobic004G256300 Sobic003G222700--Sobic004G256300 Sobic001G467100 Sobic001G467100 Sobic003G222700--Sobic001G467100 Sobic010G172400 Sobic010G172400 Sobic003G222700--Sobic010G172400 Sobic003G222700--Sobic001G061200 Sobic007G022700 Sobic007G022700 Sobic003G222700--Sobic007G022700 Sobic003G222700--Sobic007G173700 Sobic001G229300 Sobic001G229300 Sobic003G222700--Sobic001G229300 Sobic002G142700 Sobic002G142700 Sobic003G222700--Sobic002G142700 Sobic002G399900 Sobic002G399900 Sobic003G222700--Sobic002G399900 Sobic006G094600 Sobic006G094600 Sobic009G207200--Sobic006G094600 Sobic009G207200--Sobic001G061200 Sobic001G358500 Sobic001G358500 Sobic009G207200--Sobic001G358500 Sobic009G207200--Sobic002G029300 Sobic003G005900 Sobic003G005900 Sobic009G207200--Sobic003G005900 Sobic007G217400 Sobic007G217400 Sobic009G207200--Sobic007G217400 Sobic008G072200 Sobic008G072200 Sobic009G207200--Sobic008G072200 Sobic004G075200 Sobic004G075200 Sobic009G207200--Sobic004G075200 Sobic009G207200--Sobic007G022700 Sobic008G055900 Sobic008G055900 Sobic008G129600--Sobic008G055900 Sobic007G177300 Sobic007G177300 Sobic008G129600--Sobic007G177300 Sobic006G056200 Sobic006G056200 Sobic008G129600--Sobic006G056200 Sobic008G103300 Sobic008G103300 Sobic008G129600--Sobic008G103300 Sobic010G264000 Sobic010G264000 Sobic008G129600--Sobic010G264000 Sobic008G129600--Sobic001G467100 Sobic001G449900 Sobic001G449900 Sobic008G129600--Sobic001G449900 Sobic003G182300 Sobic003G182300 Sobic008G129600--Sobic003G182300 Sobic006G270600 Sobic006G270600 Sobic008G129600--Sobic006G270600 Sobic001G485300 Sobic001G485300 Sobic002G276800--Sobic001G485300 Sobic001G008100 Sobic001G008100 Sobic002G276800--Sobic001G008100 Sobic007G148400 Sobic007G148400 Sobic002G276800--Sobic007G148400 Sobic006G041800 Sobic006G041800 Sobic002G276800--Sobic006G041800 Sobic003G190600 Sobic003G190600 Sobic002G276800--Sobic003G190600 Sobic003G058500 Sobic003G058500 Sobic002G276800--Sobic003G058500 Sobic002G276800--Sobic001G061200 Sobic002G276800--Sobic001G193100 Sobic002G401700 Sobic002G401700 Sobic002G276800--Sobic002G401700 Sobic002G029300--Sobic001G023100 Sobic002G029300--Sobic007G173700 Sobic004G031800 Sobic004G031800 Sobic002G029300--Sobic004G031800 Sobic002G029300--Sobic008G072200 Sobic001G010700 Sobic001G010700 Sobic002G029300--Sobic001G010700 Sobic009G226400 Sobic009G226400 Sobic002G029300--Sobic009G226400 Sobic002G029300--Sobic001G161700 Sobic002G029300--Sobic002G141700 Sobic002G029300--Sobic006G056200 Sobic003G200600 Sobic003G200600 Sobic003G148900--Sobic003G200600 Sobic007G117800 Sobic007G117800 Sobic003G148900--Sobic007G117800 Sobic002G027800 Sobic002G027800 Sobic003G148900--Sobic002G027800 Sobic007G012900 Sobic007G012900 Sobic003G148900--Sobic007G012900 Sobic008G110500 Sobic008G110500 Sobic003G148900--Sobic008G110500 Sobic002G423800 Sobic002G423800 Sobic003G148900--Sobic002G423800 Sobic001G421400 Sobic001G421400 Sobic003G148900--Sobic001G421400 Sobic003G128300 Sobic003G128300 Sobic003G148900--Sobic003G128300 Sobic003G224300 Sobic003G224300 Sobic003G148900--Sobic003G224300 Sobic001G023100--Sobic002G029300 Sobic001G023100--Sobic007G173700 Sobic001G023100--Sobic009G226400 Sobic001G023100--Sobic008G055900 Sobic001G023100--Sobic001G161700 Sobic001G023100--Sobic008G072200 Sobic001G023100--Sobic001G193100 Sobic003G270600 Sobic003G270600 Sobic001G023100--Sobic003G270600 Sobic008G085700 Sobic008G085700 Sobic001G023100--Sobic008G085700
Octagon: transcription factors


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