Gene annotation
| Transcriptome id | Sobic.004G000100.4,Sobic.004G000100.3,Sobic.004G000100.6,Sobic.004G000100.2,Sobic.004G000100.5 |
|---|---|
| Synonym | Sb04g000210, UKL4 |
| Functional annotation | uridine/cytidine kinase-like 1, putative, expressed |
| UniProt | A0A194YM07 , A0A194YM17 , A0A194YLY2 |
| Pfam | PF00156 PF00485 |
| Panther DB | PTHR10285 PTHR10285:SF75 |
| NCBI CDD | KOG4203; Armadillo/beta-Catenin/plakoglobin |
| KEGG Orthology | K00876; udk, uridine kinase |
| Gene Ontology | GO:0009116; nucleoside metabolic process GO:0016301kinase activity GO:0008152metabolic process GO:0005524ATP binding |
Orthologs (automatic annotation)
| TAIR | AT4G26510 : uridine kinase-like 3,uridine kinase-like 4 |
|---|---|
| RAP-DB (Rice) | LOC_Os11g16370.1 : uridine/cytidine kinase-like 1, putative, expressed |
| MaizeGDB (Corn) | Zm00025a035110 , Zm00025a018616 |
| Brachypodium | KQJ91495 , KQJ94362 , KQJ94363 , KQJ94364 |
| Barley | HORVU4Hr1G043970.7 , HORVU4Hr1G043970.6 , HORVU4Hr1G043970.5 , HORVU4Hr1G043970.4 , HORVU4Hr1G043970.3 , HORVU4Hr1G043970.2 , HORVU4Hr1G043970.1 , HORVU4Hr1G043970.9 , HORVU4Hr1G043970.8 , HORVU4Hr1G043970.14 , HORVU4Hr1G043970.13 , HORVU4Hr1G043970.12 , HORVU4Hr1G043970.11 , HORVU4Hr1G043970.10 |
| Wheat | TraesCS4B02G102200 , TraesCS4A02G213800 , TraesCS4D02G098900 |
| Populus | - |
JBrowse
| Sobic.004G000100 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G173700 | WD domain, G-beta repeat domain containing protein, expressed | - |
| 2 | Sobic.001G443200 | transmembrane 9 superfamily member, putative, expressed | K17087: transmembrane 9 superfamily member 3 |
| 3 | Sobic.001G465400 | dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed | K00658: DLST, 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) |
| 4 | Sobic.001G161700 | vesicle-fusing ATPase, putative, expressed | K06027: NSF, vesicle-fusing ATPase |
| 5 | Sobic.008G102600 | expressed protein | - |
| 6 | Sobic.004G347600 | vacuolar ATP synthase subunit H, putative, expressed | K02144: V-type H+-transporting ATPase subunit H |
| 7 | Sobic.001G077900 | SSA2 - 2S albumin seed storage family protein precursor, putative, expressed | - |
| 8 | Sobic.001G023100 | ACBP4, putative, expressed | - |
| 9 | Sobic.002G029300 | pleckstrin homology domain-containing protein, putative, expressed | - |
| 10 | Sobic.001G047600 | 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed | K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) |
| 11 | Sobic.003G034900 | mitochondrial-processing peptidase subunit alpha, mitochondrial precursor, putative, expressed | K01412: PMPCA, mitochondrial-processing peptidase subunit alpha |
| 12 | Sobic.003G261800 | expressed protein | - |
| 13 | Sobic.003G058500 | expressed protein | - |
| 14 | Sobic.001G049400 | OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed | K04382: serine/threonine-protein phosphatase 2A catalytic subunit |
| 15 | Sobic.001G378200 | tetratricopeptide repeat domain containing protein, expressed | - |
| 16 | Sobic.003G196200 | elongation factor TS family protein, expressed | - |
| 17 | Sobic.003G276100 | ras-related protein, putative, expressed | K07897: Ras-related protein Rab-7A |
| 18 | Sobic.001G387800 | outer mitochondrial membrane porin, putative, expressed | K11518: mitochondrial import receptor subunit TOM40 |
| 19 | Sobic.010G040900 | trafficking protein particle complex subunit 4, putative, expressed | - |
| 20 | Sobic.004G039400 | Constitutively expressed genes(PubMedID : 24456189)@- | K03257: translation initiation factor 4A |
Gene co-expression network
Octagon: transcription factors
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