Gene annotation
Transcriptome id Sobic.003G261800.2
Synonym Sb03g031580
Functional annotation expressed protein
UniProt A0A1W0VZ22
Pfam -
Panther DB PTHR11562 PTHR11562:SF58
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0008324cation transmembrane transporter activity GO:0006812cation transport


Orthologs (automatic annotation)
TAIR AT5G38380 : -
RAP-DB (Rice) LOC_Os07g18250.2 : expressed protein
MaizeGDB (Corn) Zm00025a038848 , Zm00025a027983
Brachypodium KQK20159
Barley -
Wheat TraesCS2A02G204200 , TraesCS2D02G211700 , TraesCS2B02G231600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G261800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G141700 unc-50, putative, expressed -
2 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
3 Sobic.004G347600 vacuolar ATP synthase subunit H, putative, expressed K02144: V-type H+-transporting ATPase subunit H
4 Sobic.010G040900 trafficking protein particle complex subunit 4, putative, expressed -
5 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
6 Sobic.001G112400 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed K02258: COX11, cytochrome c oxidase assembly protein subunit 11
7 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
8 Sobic.004G000100 uridine/cytidine kinase-like 1, putative, expressed K00876: udk, uridine kinase
9 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
10 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
11 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
12 Sobic.007G173700 WD domain, G-beta repeat domain containing protein, expressed -
13 Sobic.004G297700 ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
14 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
15 Sobic.001G465400 dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed K00658: DLST, 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)
16 Sobic.006G259900 reticulon domain containing protein, putative, expressed -
17 Sobic.002G396700 NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed K03942: NADH dehydrogenase (ubiquinone) flavoprotein 1
18 Sobic.009G089700 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
19 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -
20 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19


Gene co-expression network
sample Sobic003G261800 Sobic003G261800 Sobic002G141700 Sobic002G141700 Sobic003G261800--Sobic002G141700 Sobic001G443200 Sobic001G443200 Sobic003G261800--Sobic001G443200 Sobic004G347600 Sobic004G347600 Sobic003G261800--Sobic004G347600 Sobic010G040900 Sobic010G040900 Sobic003G261800--Sobic010G040900 Sobic009G191400 Sobic009G191400 Sobic003G261800--Sobic009G191400 Sobic001G112400 Sobic001G112400 Sobic003G261800--Sobic001G112400 Sobic001G387800 Sobic001G387800 Sobic003G261800--Sobic001G387800 Sobic004G000100 Sobic004G000100 Sobic003G261800--Sobic004G000100 Sobic004G344800 Sobic004G344800 Sobic003G261800--Sobic004G344800 Sobic002G141700--Sobic003G261800 Sobic002G141700--Sobic001G443200 Sobic001G077900 Sobic001G077900 Sobic002G141700--Sobic001G077900 Sobic002G087000 Sobic002G087000 Sobic002G141700--Sobic002G087000 Sobic001G220900 Sobic001G220900 Sobic002G141700--Sobic001G220900 Sobic007G173700 Sobic007G173700 Sobic002G141700--Sobic007G173700 Sobic002G029300 Sobic002G029300 Sobic002G141700--Sobic002G029300 Sobic003G134800 Sobic003G134800 Sobic002G141700--Sobic003G134800 Sobic001G542900 Sobic001G542900 Sobic002G141700--Sobic001G542900 Sobic008G102600 Sobic008G102600 Sobic001G443200--Sobic008G102600 Sobic001G443200--Sobic004G000100 Sobic004G039400 Sobic004G039400 Sobic001G443200--Sobic004G039400 Sobic001G443200--Sobic001G112400 Sobic001G443200--Sobic004G344800 Sobic001G443200--Sobic002G141700 Sobic001G443200--Sobic010G040900 Sobic001G073600 Sobic001G073600 Sobic001G443200--Sobic001G073600 Sobic002G262200 Sobic002G262200 Sobic001G443200--Sobic002G262200 Sobic004G347600--Sobic009G191400 Sobic004G347600--Sobic001G073600 Sobic003G034900 Sobic003G034900 Sobic004G347600--Sobic003G034900 Sobic001G458800 Sobic001G458800 Sobic004G347600--Sobic001G458800 Sobic001G465400 Sobic001G465400 Sobic004G347600--Sobic001G465400 Sobic004G347600--Sobic001G112400 Sobic001G115700 Sobic001G115700 Sobic004G347600--Sobic001G115700 Sobic007G161200 Sobic007G161200 Sobic004G347600--Sobic007G161200 Sobic004G347600--Sobic001G443200 Sobic010G040900--Sobic004G039400 Sobic010G040900--Sobic001G443200 Sobic010G040900--Sobic009G191400 Sobic001G008100 Sobic001G008100 Sobic010G040900--Sobic001G008100 Sobic001G178500 Sobic001G178500 Sobic010G040900--Sobic001G178500 Sobic006G126000 Sobic006G126000 Sobic010G040900--Sobic006G126000 Sobic010G040900--Sobic003G261800 Sobic003G135600 Sobic003G135600 Sobic010G040900--Sobic003G135600 Sobic010G040900--Sobic004G344800 Sobic009G191400--Sobic001G073600 Sobic009G224400 Sobic009G224400 Sobic009G191400--Sobic009G224400 Sobic009G191400--Sobic004G347600 Sobic007G119600 Sobic007G119600 Sobic009G191400--Sobic007G119600 Sobic009G191400--Sobic003G135600 Sobic009G191400--Sobic004G344800 Sobic009G191400--Sobic002G262200 Sobic009G191400--Sobic001G458800 Sobic002G396700 Sobic002G396700 Sobic009G191400--Sobic002G396700 Sobic001G112400--Sobic002G262200 Sobic001G112400--Sobic001G443200 Sobic005G184200 Sobic005G184200 Sobic001G112400--Sobic005G184200 Sobic001G378200 Sobic001G378200 Sobic001G112400--Sobic001G378200 Sobic001G112400--Sobic004G347600 Sobic001G112400--Sobic004G039400 Sobic001G112400--Sobic004G344800 Sobic001G112400--Sobic002G396700 Sobic001G112400--Sobic001G465400 Sobic003G196200 Sobic003G196200 Sobic001G387800--Sobic003G196200 Sobic001G387800--Sobic001G178500 Sobic001G387800--Sobic001G008100 Sobic001G387800--Sobic004G039400 Sobic001G387800--Sobic007G119600 Sobic001G387800--Sobic009G191400 Sobic002G079700 Sobic002G079700 Sobic001G387800--Sobic002G079700 Sobic007G206300 Sobic007G206300 Sobic001G387800--Sobic007G206300 Sobic001G387800--Sobic001G465400 Sobic004G000100--Sobic007G173700 Sobic004G000100--Sobic001G443200 Sobic004G000100--Sobic001G465400 Sobic001G161700 Sobic001G161700 Sobic004G000100--Sobic001G161700 Sobic004G000100--Sobic008G102600 Sobic004G000100--Sobic004G347600 Sobic004G000100--Sobic001G077900 Sobic001G023100 Sobic001G023100 Sobic004G000100--Sobic001G023100 Sobic004G000100--Sobic002G029300 Sobic004G344800--Sobic001G073600 Sobic004G344800--Sobic003G135600 Sobic004G159000 Sobic004G159000 Sobic004G344800--Sobic004G159000 Sobic001G035400 Sobic001G035400 Sobic004G344800--Sobic001G035400 Sobic004G344800--Sobic009G191400 Sobic004G030000 Sobic004G030000 Sobic004G344800--Sobic004G030000 Sobic004G344800--Sobic002G262200 Sobic004G344800--Sobic002G396700 Sobic001G031900 Sobic001G031900 Sobic004G344800--Sobic001G031900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.