Gene annotation
Transcriptome id Sobic.004G297700.1
Synonym Sb04g033160, ATRABD2A, ARA5, ARA-5, RABD2A, RA-5, ATRAB1B
Functional annotation ras-related protein, putative, expressed
UniProt C5XS07
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF520
NCBI CDD KOG0084; GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins
KEGG Orthology K07874; Ras-related protein Rab-1A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G02130 : RAS 5
RAP-DB (Rice) LOC_Os01g08450.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a020904 , Zm00025a020905 , Zm00025a032185
Brachypodium KQK08120 , KQK08121
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G297700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G171500 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed K00413: CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit
2 Sobic.010G032600 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
3 Sobic.006G276700 -(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
4 Sobic.002G186300 serine/threonine-protein kinase 16, putative, expressed K08856: serine/threonine kinase 16
5 Sobic.004G244000 dehydrogenase E1 component domain containing protein, expressed K00161: PDHA, pyruvate dehydrogenase E1 component alpha subunit
6 Sobic.007G023400 succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit
7 Sobic.001G457000 ATP synthase gamma chain, putative, expressed K02136: ATPeF1G, ATP5C1, F-type H+-transporting ATPase subunit gamma
8 Sobic.004G202100 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
9 Sobic.003G034900 mitochondrial-processing peptidase subunit alpha, mitochondrial precursor, putative, expressed K01412: PMPCA, mitochondrial-processing peptidase subunit alpha
10 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1
11 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
12 Sobic.001G458800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
13 Sobic.003G261800 expressed protein -
14 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
15 Sobic.009G209900 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g
16 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
17 Sobic.006G058900 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
18 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
19 Sobic.004G347600 vacuolar ATP synthase subunit H, putative, expressed K02144: V-type H+-transporting ATPase subunit H
20 Sobic.002G309500 ras-related protein, putative, expressed K07893: Ras-related protein Rab-6A


Gene co-expression network
sample Sobic004G297700 Sobic004G297700 Sobic007G171500 Sobic007G171500 Sobic004G297700--Sobic007G171500 Sobic010G032600 Sobic010G032600 Sobic004G297700--Sobic010G032600 Sobic006G276700 Sobic006G276700 Sobic004G297700--Sobic006G276700 Sobic002G186300 Sobic002G186300 Sobic004G297700--Sobic002G186300 Sobic004G244000 Sobic004G244000 Sobic004G297700--Sobic004G244000 Sobic007G023400 Sobic007G023400 Sobic004G297700--Sobic007G023400 Sobic001G457000 Sobic001G457000 Sobic004G297700--Sobic001G457000 Sobic004G202100 Sobic004G202100 Sobic004G297700--Sobic004G202100 Sobic003G034900 Sobic003G034900 Sobic004G297700--Sobic003G034900 Sobic007G171500--Sobic004G297700 Sobic007G171500--Sobic003G034900 Sobic001G458800 Sobic001G458800 Sobic007G171500--Sobic001G458800 Sobic009G224400 Sobic009G224400 Sobic007G171500--Sobic009G224400 Sobic007G171500--Sobic010G032600 Sobic002G395000 Sobic002G395000 Sobic007G171500--Sobic002G395000 Sobic006G058900 Sobic006G058900 Sobic007G171500--Sobic006G058900 Sobic009G191400 Sobic009G191400 Sobic007G171500--Sobic009G191400 Sobic007G171500--Sobic001G457000 Sobic010G032600--Sobic007G023400 Sobic010G032600--Sobic002G395000 Sobic010G032600--Sobic007G171500 Sobic010G032600--Sobic004G297700 Sobic010G032600--Sobic001G457000 Sobic002G262200 Sobic002G262200 Sobic010G032600--Sobic002G262200 Sobic001G073600 Sobic001G073600 Sobic010G032600--Sobic001G073600 Sobic010G032600--Sobic009G191400 Sobic010G032600--Sobic009G224400 Sobic006G276700--Sobic004G297700 Sobic001G282500 Sobic001G282500 Sobic006G276700--Sobic001G282500 Sobic006G276700--Sobic010G032600 Sobic006G276700--Sobic001G073600 Sobic006G276700--Sobic002G395000 Sobic003G135600 Sobic003G135600 Sobic006G276700--Sobic003G135600 Sobic006G276700--Sobic004G202100 Sobic006G276700--Sobic007G023400 Sobic006G276700--Sobic007G171500 Sobic002G186300--Sobic001G458800 Sobic002G186300--Sobic003G034900 Sobic007G119600 Sobic007G119600 Sobic002G186300--Sobic007G119600 Sobic002G186300--Sobic004G297700 Sobic002G186300--Sobic004G244000 Sobic001G115700 Sobic001G115700 Sobic002G186300--Sobic001G115700 Sobic002G186300--Sobic009G224400 Sobic002G186300--Sobic001G457000 Sobic008G057900 Sobic008G057900 Sobic002G186300--Sobic008G057900 Sobic004G244000--Sobic004G297700 Sobic004G244000--Sobic002G186300 Sobic004G244000--Sobic003G034900 Sobic004G244000--Sobic007G171500 Sobic004G244000--Sobic007G119600 Sobic004G244000--Sobic001G458800 Sobic004G244000--Sobic001G457000 Sobic004G244000--Sobic009G224400 Sobic004G244000--Sobic006G058900 Sobic007G023400--Sobic002G395000 Sobic007G023400--Sobic010G032600 Sobic007G023400--Sobic009G224400 Sobic007G023400--Sobic007G171500 Sobic007G023400--Sobic004G297700 Sobic007G023400--Sobic003G135600 Sobic007G023400--Sobic004G202100 Sobic002G217500 Sobic002G217500 Sobic007G023400--Sobic002G217500 Sobic007G023400--Sobic001G073600 Sobic001G457000--Sobic007G119600 Sobic004G093600 Sobic004G093600 Sobic001G457000--Sobic004G093600 Sobic004G218600 Sobic004G218600 Sobic001G457000--Sobic004G218600 Sobic009G259200 Sobic009G259200 Sobic001G457000--Sobic009G259200 Sobic001G457000--Sobic009G224400 Sobic001G457000--Sobic003G034900 Sobic001G387200 Sobic001G387200 Sobic001G457000--Sobic001G387200 Sobic001G457000--Sobic010G032600 Sobic001G457000--Sobic007G171500 Sobic001G031900 Sobic001G031900 Sobic004G202100--Sobic001G031900 Sobic004G202100--Sobic002G395000 Sobic004G262300 Sobic004G262300 Sobic004G202100--Sobic004G262300 Sobic004G202100--Sobic006G058900 Sobic004G202100--Sobic001G282500 Sobic006G231500 Sobic006G231500 Sobic004G202100--Sobic006G231500 Sobic002G309500 Sobic002G309500 Sobic004G202100--Sobic002G309500 Sobic004G202100--Sobic004G297700 Sobic004G202100--Sobic007G023400 Sobic003G034900--Sobic001G458800 Sobic001G465400 Sobic001G465400 Sobic003G034900--Sobic001G465400 Sobic003G034900--Sobic004G093600 Sobic003G034900--Sobic001G115700 Sobic001G047600 Sobic001G047600 Sobic003G034900--Sobic001G047600 Sobic003G034900--Sobic007G171500 Sobic003G034900--Sobic009G224400 Sobic004G347600 Sobic004G347600 Sobic003G034900--Sobic004G347600 Sobic003G034900--Sobic001G457000
Octagon: transcription factors


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