Gene annotation
Transcriptome id Sobic.006G276700.3,Sobic.006G276700.2
Synonym AtPPa3, PPa3, Sb06g033780
Functional annotation - (PubMedID : 26976818)
soluble inorganic pyrophosphatase, putative, expressed
UniProt A0A1B6PPB3 , A0A1B6PP94
Pfam PF00719
Panther DB PTHR10286 PTHR10286:SF22
NCBI CDD KOG1626; Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38
KEGG Orthology K01507; inorganic pyrophosphatase
Gene Ontology GO:0006796; phosphate-containing compound metabolic process GO:0005737cytoplasm GO:0004427inorganic diphosphatase activity GO:0000287magnesium ion binding


Orthologs (automatic annotation)
TAIR AT2G46860 : pyrophosphorylase 3
RAP-DB (Rice) LOC_Os04g59040.3,LOC_Os04g59040.1 : soluble inorganic pyrophosphatase, putative, expressed
MaizeGDB (Corn) Zm00025a057480 , Zm00025a010507
Brachypodium KQK07732 , KQK07731 , KQJ85432
Barley HORVU1Hr1G075660.7 , HORVU1Hr1G075660.5 , HORVU1Hr1G075660.4 , HORVU1Hr1G075660.2 , HORVU1Hr1G075660.1
Wheat TraesCS2A02G576400 , TraesCS1B02G355800 , TraesCS2B02G611000 , TraesCS2B02G611000 , TraesCS2D02G587100 , TraesCS3B02G077900 , TraesCS3B02G077900 , TraesCS3B02G077900
Populus PNT04143 , PNT04142 , PNT04141 , PNT30454 , PNT30452 , PNT30453


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cDNA sequences
Sobic.006G276700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G297700 ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
2 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
3 Sobic.010G032600 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
4 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
5 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
6 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
7 Sobic.004G202100 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
8 Sobic.007G023400 succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit
9 Sobic.007G171500 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed K00413: CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit
10 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
11 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
12 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1
13 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
14 Sobic.007G159700 expressed protein K02138: ATPeF0D, ATP5H, F-type H+-transporting ATPase subunit d
15 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
16 Sobic.002G308300 expressed protein -
17 Sobic.001G457000 ATP synthase gamma chain, putative, expressed K02136: ATPeF1G, ATP5C1, F-type H+-transporting ATPase subunit gamma
18 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
19 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
20 Sobic.002G186300 serine/threonine-protein kinase 16, putative, expressed K08856: serine/threonine kinase 16


Gene co-expression network
sample Sobic006G276700 Sobic006G276700 Sobic004G297700 Sobic004G297700 Sobic006G276700--Sobic004G297700 Sobic001G282500 Sobic001G282500 Sobic006G276700--Sobic001G282500 Sobic010G032600 Sobic010G032600 Sobic006G276700--Sobic010G032600 Sobic001G073600 Sobic001G073600 Sobic006G276700--Sobic001G073600 Sobic002G395000 Sobic002G395000 Sobic006G276700--Sobic002G395000 Sobic003G135600 Sobic003G135600 Sobic006G276700--Sobic003G135600 Sobic004G202100 Sobic004G202100 Sobic006G276700--Sobic004G202100 Sobic007G023400 Sobic007G023400 Sobic006G276700--Sobic007G023400 Sobic007G171500 Sobic007G171500 Sobic006G276700--Sobic007G171500 Sobic004G297700--Sobic007G171500 Sobic004G297700--Sobic010G032600 Sobic004G297700--Sobic006G276700 Sobic002G186300 Sobic002G186300 Sobic004G297700--Sobic002G186300 Sobic004G244000 Sobic004G244000 Sobic004G297700--Sobic004G244000 Sobic004G297700--Sobic007G023400 Sobic001G457000 Sobic001G457000 Sobic004G297700--Sobic001G457000 Sobic004G297700--Sobic004G202100 Sobic003G034900 Sobic003G034900 Sobic004G297700--Sobic003G034900 Sobic002G309700 Sobic002G309700 Sobic001G282500--Sobic002G309700 Sobic009G215300 Sobic009G215300 Sobic001G282500--Sobic009G215300 Sobic004G260200 Sobic004G260200 Sobic001G282500--Sobic004G260200 Sobic002G356400 Sobic002G356400 Sobic001G282500--Sobic002G356400 Sobic001G282500--Sobic002G395000 Sobic002G308300 Sobic002G308300 Sobic001G282500--Sobic002G308300 Sobic001G181500 Sobic001G181500 Sobic001G282500--Sobic001G181500 Sobic001G282500--Sobic003G135600 Sobic001G350600 Sobic001G350600 Sobic001G282500--Sobic001G350600 Sobic010G032600--Sobic007G023400 Sobic010G032600--Sobic002G395000 Sobic010G032600--Sobic007G171500 Sobic010G032600--Sobic004G297700 Sobic010G032600--Sobic001G457000 Sobic002G262200 Sobic002G262200 Sobic010G032600--Sobic002G262200 Sobic010G032600--Sobic001G073600 Sobic009G191400 Sobic009G191400 Sobic010G032600--Sobic009G191400 Sobic009G224400 Sobic009G224400 Sobic010G032600--Sobic009G224400 Sobic001G073600--Sobic009G191400 Sobic001G073600--Sobic009G224400 Sobic001G073600--Sobic003G135600 Sobic001G073600--Sobic002G395000 Sobic004G344800 Sobic004G344800 Sobic001G073600--Sobic004G344800 Sobic007G119600 Sobic007G119600 Sobic001G073600--Sobic007G119600 Sobic004G347600 Sobic004G347600 Sobic001G073600--Sobic004G347600 Sobic001G458800 Sobic001G458800 Sobic001G073600--Sobic001G458800 Sobic004G155100 Sobic004G155100 Sobic001G073600--Sobic004G155100 Sobic002G395000--Sobic004G260200 Sobic002G395000--Sobic003G135600 Sobic002G395000--Sobic009G224400 Sobic003G238500 Sobic003G238500 Sobic002G395000--Sobic003G238500 Sobic002G395000--Sobic002G309700 Sobic002G395000--Sobic001G073600 Sobic002G395000--Sobic004G155100 Sobic002G395000--Sobic007G023400 Sobic002G078300 Sobic002G078300 Sobic002G395000--Sobic002G078300 Sobic003G135600--Sobic004G155100 Sobic003G135600--Sobic002G395000 Sobic003G135600--Sobic001G073600 Sobic003G135600--Sobic009G224400 Sobic003G135600--Sobic002G309700 Sobic003G135600--Sobic009G191400 Sobic003G135600--Sobic001G181500 Sobic009G211900 Sobic009G211900 Sobic003G135600--Sobic009G211900 Sobic003G135600--Sobic004G260200 Sobic001G031900 Sobic001G031900 Sobic004G202100--Sobic001G031900 Sobic004G202100--Sobic002G395000 Sobic004G262300 Sobic004G262300 Sobic004G202100--Sobic004G262300 Sobic006G058900 Sobic006G058900 Sobic004G202100--Sobic006G058900 Sobic004G202100--Sobic001G282500 Sobic006G231500 Sobic006G231500 Sobic004G202100--Sobic006G231500 Sobic002G309500 Sobic002G309500 Sobic004G202100--Sobic002G309500 Sobic004G202100--Sobic004G297700 Sobic004G202100--Sobic007G023400 Sobic007G023400--Sobic002G395000 Sobic007G023400--Sobic010G032600 Sobic007G023400--Sobic009G224400 Sobic007G023400--Sobic007G171500 Sobic007G023400--Sobic004G297700 Sobic007G023400--Sobic003G135600 Sobic007G023400--Sobic004G202100 Sobic002G217500 Sobic002G217500 Sobic007G023400--Sobic002G217500 Sobic007G023400--Sobic001G073600 Sobic007G171500--Sobic004G297700 Sobic007G171500--Sobic003G034900 Sobic007G171500--Sobic001G458800 Sobic007G171500--Sobic009G224400 Sobic007G171500--Sobic010G032600 Sobic007G171500--Sobic002G395000 Sobic007G171500--Sobic006G058900 Sobic007G171500--Sobic009G191400 Sobic007G171500--Sobic001G457000
Octagon: transcription factors


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