Gene annotation
Transcriptome id Sobic.007G171500.2,Sobic.007G171500.1
Synonym Sb07g024370
Functional annotation cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed
UniProt A0A1B6PIG1 , A0A1B6PIA7
Pfam PF02167
Panther DB PTHR10266 PTHR10266:SF3
NCBI CDD KOG3052; Cytochrome c1
KEGG Orthology K00413; CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit
Gene Ontology GO:0009055; electron transfer activity


Orthologs (automatic annotation)
TAIR AT5G40810 : Cytochrome C1 family
RAP-DB (Rice) LOC_Os05g23620.2 : cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a030573 , Zm00025a005620
Brachypodium KQJ99339
Barley HORVU3Hr1G098650.2 , HORVU7Hr1G058850.7 , HORVU7Hr1G058850.6 , HORVU7Hr1G058850.5 , HORVU7Hr1G058850.4 , HORVU7Hr1G058850.3 , HORVU7Hr1G058850.2 , HORVU7Hr1G058850.1 , HORVU3Hr1G098650.1 , HORVU7Hr1G058850.8
Wheat TraesCS3D02G451000 , TraesCS3A02G458200 , TraesCS7B02G175500 , TraesCS7D02G277900 , TraesCS7A02G278100
Populus -


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cDNA sequences
Sobic.007G171500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G297700 ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A
2 Sobic.003G034900 mitochondrial-processing peptidase subunit alpha, mitochondrial precursor, putative, expressed K01412: PMPCA, mitochondrial-processing peptidase subunit alpha
3 Sobic.001G458800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
4 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
5 Sobic.010G032600 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
6 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
7 Sobic.006G058900 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
8 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
9 Sobic.001G457000 ATP synthase gamma chain, putative, expressed K02136: ATPeF1G, ATP5C1, F-type H+-transporting ATPase subunit gamma
10 Sobic.002G396700 NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed K03942: NADH dehydrogenase (ubiquinone) flavoprotein 1
11 Sobic.007G023400 succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit
12 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
13 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
14 Sobic.004G093600 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
15 Sobic.004G244000 dehydrogenase E1 component domain containing protein, expressed K00161: PDHA, pyruvate dehydrogenase E1 component alpha subunit
16 Sobic.002G079700 ribosomal protein L22, putative, expressed K02890: RP-L22, MRPL22, large subunit ribosomal protein L22
17 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
18 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
19 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19
20 Sobic.001G115700 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K03934: NADH dehydrogenase (ubiquinone) Fe-S protein 1


Gene co-expression network
sample Sobic007G171500 Sobic007G171500 Sobic004G297700 Sobic004G297700 Sobic007G171500--Sobic004G297700 Sobic003G034900 Sobic003G034900 Sobic007G171500--Sobic003G034900 Sobic001G458800 Sobic001G458800 Sobic007G171500--Sobic001G458800 Sobic009G224400 Sobic009G224400 Sobic007G171500--Sobic009G224400 Sobic010G032600 Sobic010G032600 Sobic007G171500--Sobic010G032600 Sobic002G395000 Sobic002G395000 Sobic007G171500--Sobic002G395000 Sobic006G058900 Sobic006G058900 Sobic007G171500--Sobic006G058900 Sobic009G191400 Sobic009G191400 Sobic007G171500--Sobic009G191400 Sobic001G457000 Sobic001G457000 Sobic007G171500--Sobic001G457000 Sobic004G297700--Sobic007G171500 Sobic004G297700--Sobic010G032600 Sobic006G276700 Sobic006G276700 Sobic004G297700--Sobic006G276700 Sobic002G186300 Sobic002G186300 Sobic004G297700--Sobic002G186300 Sobic004G244000 Sobic004G244000 Sobic004G297700--Sobic004G244000 Sobic007G023400 Sobic007G023400 Sobic004G297700--Sobic007G023400 Sobic004G297700--Sobic001G457000 Sobic004G202100 Sobic004G202100 Sobic004G297700--Sobic004G202100 Sobic004G297700--Sobic003G034900 Sobic003G034900--Sobic001G458800 Sobic001G465400 Sobic001G465400 Sobic003G034900--Sobic001G465400 Sobic004G093600 Sobic004G093600 Sobic003G034900--Sobic004G093600 Sobic001G115700 Sobic001G115700 Sobic003G034900--Sobic001G115700 Sobic001G047600 Sobic001G047600 Sobic003G034900--Sobic001G047600 Sobic003G034900--Sobic007G171500 Sobic003G034900--Sobic009G224400 Sobic004G347600 Sobic004G347600 Sobic003G034900--Sobic004G347600 Sobic003G034900--Sobic001G457000 Sobic001G458800--Sobic003G034900 Sobic001G458800--Sobic009G224400 Sobic001G458800--Sobic006G058900 Sobic001G458800--Sobic001G115700 Sobic001G458800--Sobic007G171500 Sobic001G073600 Sobic001G073600 Sobic001G458800--Sobic001G073600 Sobic001G458800--Sobic002G186300 Sobic001G458800--Sobic002G395000 Sobic001G031900 Sobic001G031900 Sobic001G458800--Sobic001G031900 Sobic009G224400--Sobic001G073600 Sobic009G224400--Sobic009G191400 Sobic009G224400--Sobic002G395000 Sobic007G119600 Sobic007G119600 Sobic009G224400--Sobic007G119600 Sobic003G135600 Sobic003G135600 Sobic009G224400--Sobic003G135600 Sobic009G224400--Sobic001G458800 Sobic004G155100 Sobic004G155100 Sobic009G224400--Sobic004G155100 Sobic009G224400--Sobic003G034900 Sobic002G262200 Sobic002G262200 Sobic009G224400--Sobic002G262200 Sobic010G032600--Sobic007G023400 Sobic010G032600--Sobic002G395000 Sobic010G032600--Sobic007G171500 Sobic010G032600--Sobic004G297700 Sobic010G032600--Sobic001G457000 Sobic010G032600--Sobic002G262200 Sobic010G032600--Sobic001G073600 Sobic010G032600--Sobic009G191400 Sobic010G032600--Sobic009G224400 Sobic004G260200 Sobic004G260200 Sobic002G395000--Sobic004G260200 Sobic002G395000--Sobic003G135600 Sobic002G395000--Sobic009G224400 Sobic003G238500 Sobic003G238500 Sobic002G395000--Sobic003G238500 Sobic002G309700 Sobic002G309700 Sobic002G395000--Sobic002G309700 Sobic002G395000--Sobic001G073600 Sobic002G395000--Sobic004G155100 Sobic002G395000--Sobic007G023400 Sobic002G078300 Sobic002G078300 Sobic002G395000--Sobic002G078300 Sobic006G058900--Sobic001G031900 Sobic006G058900--Sobic001G458800 Sobic006G058900--Sobic004G202100 Sobic006G058900--Sobic002G395000 Sobic006G058900--Sobic007G171500 Sobic002G309500 Sobic002G309500 Sobic006G058900--Sobic002G309500 Sobic004G344800 Sobic004G344800 Sobic006G058900--Sobic004G344800 Sobic006G058900--Sobic003G034900 Sobic003G185500 Sobic003G185500 Sobic006G058900--Sobic003G185500 Sobic009G191400--Sobic001G073600 Sobic009G191400--Sobic009G224400 Sobic009G191400--Sobic004G347600 Sobic009G191400--Sobic007G119600 Sobic009G191400--Sobic003G135600 Sobic009G191400--Sobic004G344800 Sobic009G191400--Sobic002G262200 Sobic009G191400--Sobic001G458800 Sobic002G396700 Sobic002G396700 Sobic009G191400--Sobic002G396700 Sobic001G457000--Sobic007G119600 Sobic001G457000--Sobic004G093600 Sobic004G218600 Sobic004G218600 Sobic001G457000--Sobic004G218600 Sobic009G259200 Sobic009G259200 Sobic001G457000--Sobic009G259200 Sobic001G457000--Sobic009G224400 Sobic001G457000--Sobic003G034900 Sobic001G387200 Sobic001G387200 Sobic001G457000--Sobic001G387200 Sobic001G457000--Sobic010G032600 Sobic001G457000--Sobic007G171500
Octagon: transcription factors


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