Gene annotation
Transcriptome id Sobic.004G039400.1,Sobic.004G039400.2,Sobic.004G039400.3
Synonym TIF4A1, Sb04g003390, EIF4A1, RH4
Functional annotation Constitutively expressed genes (PubMedID : 24456189)
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UniProt C5XUM2
Pfam PF04851 PF00271
Panther DB PTHR24031 PTHR24031:SF294
NCBI CDD -
KEGG Orthology K03257; translation initiation factor 4A
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G13920 : eukaryotic translation initiation factor 4A1
RAP-DB (Rice) LOC_Os02g05330.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a018969 , Zm00025a018360 , Zm00025a041779 , Zm00025a008453
Brachypodium KQK17395 , KQK17396 , KQJ93299 , PNT65866
Barley HORVU2Hr1G015870.1 , HORVU6Hr1G020910.1 , HORVU6Hr1G020910.2 , HORVU6Hr1G020910.3
Wheat TraesCS7B02G320000 , TraesCS6B02G144000 , TraesCS6B02G144000 , TraesCS7D02G412200 , TraesCS6D02G105000 , TraesCS7A02G419400 , TraesCS6A02G116200
Populus PNT33127 , PNT55534 , PNT55535 , PNT43595 , PNT43597 , PNT43596 , PNT43598


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cDNA sequences
Sobic.004G039400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
2 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
3 Sobic.010G040900 trafficking protein particle complex subunit 4, putative, expressed -
4 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
5 Sobic.002G262200 expressed protein -
6 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
7 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
8 Sobic.001G387200 expressed protein -
9 Sobic.002G079700 ribosomal protein L22, putative, expressed K02890: RP-L22, MRPL22, large subunit ribosomal protein L22
10 Sobic.001G112400 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed K02258: COX11, cytochrome c oxidase assembly protein subunit 11
11 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
12 Sobic.001G378200 tetratricopeptide repeat domain containing protein, expressed -
13 Sobic.009G206600 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
14 Sobic.008G018300 expressed protein K17402: small subunit ribosomal protein S23
15 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
16 Sobic.007G003100 transmembrane protein 18, putative, expressed -
17 Sobic.001G465400 dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed K00658: DLST, 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)
18 Sobic.010G032600 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
19 Sobic.004G347600 vacuolar ATP synthase subunit H, putative, expressed K02144: V-type H+-transporting ATPase subunit H
20 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -


Gene co-expression network
sample Sobic004G039400 Sobic004G039400 Sobic001G008100 Sobic001G008100 Sobic004G039400--Sobic001G008100 Sobic001G073600 Sobic001G073600 Sobic004G039400--Sobic001G073600 Sobic010G040900 Sobic010G040900 Sobic004G039400--Sobic010G040900 Sobic001G443200 Sobic001G443200 Sobic004G039400--Sobic001G443200 Sobic002G262200 Sobic002G262200 Sobic004G039400--Sobic002G262200 Sobic009G191400 Sobic009G191400 Sobic004G039400--Sobic009G191400 Sobic004G344800 Sobic004G344800 Sobic004G039400--Sobic004G344800 Sobic001G387200 Sobic001G387200 Sobic004G039400--Sobic001G387200 Sobic002G079700 Sobic002G079700 Sobic004G039400--Sobic002G079700 Sobic001G008100--Sobic004G039400 Sobic006G041800 Sobic006G041800 Sobic001G008100--Sobic006G041800 Sobic001G465400 Sobic001G465400 Sobic001G008100--Sobic001G465400 Sobic001G008100--Sobic010G040900 Sobic001G387800 Sobic001G387800 Sobic001G008100--Sobic001G387800 Sobic003G276100 Sobic003G276100 Sobic001G008100--Sobic003G276100 Sobic001G008100--Sobic002G079700 Sobic001G008100--Sobic009G191400 Sobic002G276800 Sobic002G276800 Sobic001G008100--Sobic002G276800 Sobic001G073600--Sobic009G191400 Sobic009G224400 Sobic009G224400 Sobic001G073600--Sobic009G224400 Sobic003G135600 Sobic003G135600 Sobic001G073600--Sobic003G135600 Sobic002G395000 Sobic002G395000 Sobic001G073600--Sobic002G395000 Sobic001G073600--Sobic004G344800 Sobic007G119600 Sobic007G119600 Sobic001G073600--Sobic007G119600 Sobic004G347600 Sobic004G347600 Sobic001G073600--Sobic004G347600 Sobic001G458800 Sobic001G458800 Sobic001G073600--Sobic001G458800 Sobic004G155100 Sobic004G155100 Sobic001G073600--Sobic004G155100 Sobic010G040900--Sobic004G039400 Sobic010G040900--Sobic001G443200 Sobic010G040900--Sobic009G191400 Sobic010G040900--Sobic001G008100 Sobic001G178500 Sobic001G178500 Sobic010G040900--Sobic001G178500 Sobic006G126000 Sobic006G126000 Sobic010G040900--Sobic006G126000 Sobic003G261800 Sobic003G261800 Sobic010G040900--Sobic003G261800 Sobic010G040900--Sobic003G135600 Sobic010G040900--Sobic004G344800 Sobic008G102600 Sobic008G102600 Sobic001G443200--Sobic008G102600 Sobic004G000100 Sobic004G000100 Sobic001G443200--Sobic004G000100 Sobic001G443200--Sobic004G039400 Sobic001G112400 Sobic001G112400 Sobic001G443200--Sobic001G112400 Sobic001G443200--Sobic004G344800 Sobic002G141700 Sobic002G141700 Sobic001G443200--Sobic002G141700 Sobic001G443200--Sobic010G040900 Sobic001G443200--Sobic001G073600 Sobic001G443200--Sobic002G262200 Sobic004G159000 Sobic004G159000 Sobic002G262200--Sobic004G159000 Sobic002G262200--Sobic009G224400 Sobic002G262200--Sobic002G395000 Sobic002G262200--Sobic003G135600 Sobic002G262200--Sobic004G344800 Sobic002G262200--Sobic001G073600 Sobic002G262200--Sobic001G112400 Sobic007G013900 Sobic007G013900 Sobic002G262200--Sobic007G013900 Sobic002G262200--Sobic009G191400 Sobic009G191400--Sobic001G073600 Sobic009G191400--Sobic009G224400 Sobic009G191400--Sobic004G347600 Sobic009G191400--Sobic007G119600 Sobic009G191400--Sobic003G135600 Sobic009G191400--Sobic004G344800 Sobic009G191400--Sobic002G262200 Sobic009G191400--Sobic001G458800 Sobic002G396700 Sobic002G396700 Sobic009G191400--Sobic002G396700 Sobic004G344800--Sobic001G073600 Sobic004G344800--Sobic003G135600 Sobic004G344800--Sobic004G159000 Sobic001G035400 Sobic001G035400 Sobic004G344800--Sobic001G035400 Sobic004G344800--Sobic009G191400 Sobic004G030000 Sobic004G030000 Sobic004G344800--Sobic004G030000 Sobic004G344800--Sobic002G262200 Sobic004G344800--Sobic002G396700 Sobic001G031900 Sobic001G031900 Sobic004G344800--Sobic001G031900 Sobic003G129900 Sobic003G129900 Sobic001G387200--Sobic003G129900 Sobic004G093600 Sobic004G093600 Sobic001G387200--Sobic004G093600 Sobic006G120900 Sobic006G120900 Sobic001G387200--Sobic006G120900 Sobic004G173700 Sobic004G173700 Sobic001G387200--Sobic004G173700 Sobic008G018300 Sobic008G018300 Sobic001G387200--Sobic008G018300 Sobic004G256700 Sobic004G256700 Sobic001G387200--Sobic004G256700 Sobic002G255400 Sobic002G255400 Sobic001G387200--Sobic002G255400 Sobic002G420600 Sobic002G420600 Sobic001G387200--Sobic002G420600 Sobic005G019100 Sobic005G019100 Sobic001G387200--Sobic005G019100 Sobic002G079700--Sobic001G178500 Sobic002G079700--Sobic003G135600 Sobic002G079700--Sobic004G039400 Sobic002G079700--Sobic001G008100 Sobic002G079700--Sobic009G191400 Sobic004G045300 Sobic004G045300 Sobic002G079700--Sobic004G045300 Sobic002G079700--Sobic009G224400 Sobic003G388700 Sobic003G388700 Sobic002G079700--Sobic003G388700 Sobic002G079700--Sobic001G073600
Octagon: transcription factors


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