Gene annotation
Transcriptome id Sobic.009G206600.1
Synonym Sb09g026330
Functional annotation 50S ribosomal protein L20, putative, expressed
UniProt C5Z1G2
Pfam PF00453
Panther DB PTHR10986
NCBI CDD KOG4707; Mitochondrial/chloroplast ribosomal protein L20
KEGG Orthology K02887; RP-L20, MRPL20, large subunit ribosomal protein L20
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G16740 : Ribosomal protein L20
RAP-DB (Rice) LOC_Os05g45220.1 : 50S ribosomal protein L20, putative, expressed
MaizeGDB (Corn) Zm00025a037998
Brachypodium KQK09604
Barley HORVU3Hr1G069670.3 , HORVU3Hr1G069670.2 , HORVU3Hr1G069670.1 , HORVU3Hr1G069670.6 , HORVU3Hr1G069670.5 , HORVU3Hr1G069670.4 , HORVU3Hr1G069680.2 , HORVU3Hr1G069680.1
Wheat TraesCS3A02G280300 , TraesCS3B02G314100 , TraesCS3D02G280000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G039400 Constitutively expressed genes(PubMedID : 24456189)@- K03257: translation initiation factor 4A
2 Sobic.002G387800 - K12456: anaphase-promoting complex subunit 13
3 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
4 Sobic.006G203900 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
5 Sobic.003G388700 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
6 Sobic.004G186100 expressed protein -
7 Sobic.007G003100 transmembrane protein 18, putative, expressed -
8 Sobic.008G018300 expressed protein K17402: small subunit ribosomal protein S23
9 Sobic.002G217500 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
10 Sobic.004G344800 NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed K03953: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9
11 Sobic.009G211900 expressed protein -
12 Sobic.003G016300 SFT2, putative, expressed -
13 Sobic.010G089500 annexin, putative, expressed -
14 Sobic.006G124300 metalloprotease ATP23, putative, expressed K18156: ATP23, mitochondrial inner membrane protease ATP23
15 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
16 Sobic.003G135600 bacterial transferase hexapeptide domain containing protein, expressed -
17 Sobic.004G347600 vacuolar ATP synthase subunit H, putative, expressed K02144: V-type H+-transporting ATPase subunit H
18 Sobic.002G352200 succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed K01899: succinyl-CoA synthetase alpha subunit
19 Sobic.001G181500 expressed protein -
20 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -


Gene co-expression network
sample Sobic009G206600 Sobic009G206600 Sobic004G039400 Sobic004G039400 Sobic009G206600--Sobic004G039400 Sobic002G387800 Sobic002G387800 Sobic009G206600--Sobic002G387800 Sobic001G073600 Sobic001G073600 Sobic009G206600--Sobic001G073600 Sobic006G203900 Sobic006G203900 Sobic009G206600--Sobic006G203900 Sobic003G388700 Sobic003G388700 Sobic009G206600--Sobic003G388700 Sobic004G186100 Sobic004G186100 Sobic009G206600--Sobic004G186100 Sobic007G003100 Sobic007G003100 Sobic009G206600--Sobic007G003100 Sobic008G018300 Sobic008G018300 Sobic009G206600--Sobic008G018300 Sobic002G217500 Sobic002G217500 Sobic009G206600--Sobic002G217500 Sobic001G008100 Sobic001G008100 Sobic004G039400--Sobic001G008100 Sobic004G039400--Sobic001G073600 Sobic010G040900 Sobic010G040900 Sobic004G039400--Sobic010G040900 Sobic001G443200 Sobic001G443200 Sobic004G039400--Sobic001G443200 Sobic002G262200 Sobic002G262200 Sobic004G039400--Sobic002G262200 Sobic009G191400 Sobic009G191400 Sobic004G039400--Sobic009G191400 Sobic004G344800 Sobic004G344800 Sobic004G039400--Sobic004G344800 Sobic001G387200 Sobic001G387200 Sobic004G039400--Sobic001G387200 Sobic002G079700 Sobic002G079700 Sobic004G039400--Sobic002G079700 Sobic009G211900 Sobic009G211900 Sobic002G387800--Sobic009G211900 Sobic002G387800--Sobic009G206600 Sobic003G074900 Sobic003G074900 Sobic002G387800--Sobic003G074900 Sobic002G387800--Sobic006G203900 Sobic002G387800--Sobic002G217500 Sobic003G016300 Sobic003G016300 Sobic002G387800--Sobic003G016300 Sobic001G192700 Sobic001G192700 Sobic002G387800--Sobic001G192700 Sobic008G084100 Sobic008G084100 Sobic002G387800--Sobic008G084100 Sobic006G124300 Sobic006G124300 Sobic002G387800--Sobic006G124300 Sobic001G073600--Sobic009G191400 Sobic009G224400 Sobic009G224400 Sobic001G073600--Sobic009G224400 Sobic003G135600 Sobic003G135600 Sobic001G073600--Sobic003G135600 Sobic002G395000 Sobic002G395000 Sobic001G073600--Sobic002G395000 Sobic001G073600--Sobic004G344800 Sobic007G119600 Sobic007G119600 Sobic001G073600--Sobic007G119600 Sobic004G347600 Sobic004G347600 Sobic001G073600--Sobic004G347600 Sobic001G458800 Sobic001G458800 Sobic001G073600--Sobic001G458800 Sobic004G155100 Sobic004G155100 Sobic001G073600--Sobic004G155100 Sobic008G136800 Sobic008G136800 Sobic006G203900--Sobic008G136800 Sobic006G203900--Sobic009G211900 Sobic001G035400 Sobic001G035400 Sobic006G203900--Sobic001G035400 Sobic006G203900--Sobic001G073600 Sobic004G138300 Sobic004G138300 Sobic006G203900--Sobic004G138300 Sobic006G203900--Sobic006G124300 Sobic006G203900--Sobic003G135600 Sobic009G001900 Sobic009G001900 Sobic006G203900--Sobic009G001900 Sobic007G013900 Sobic007G013900 Sobic006G203900--Sobic007G013900 Sobic003G388700--Sobic007G119600 Sobic003G388700--Sobic001G073600 Sobic003G388700--Sobic003G135600 Sobic003G388700--Sobic009G191400 Sobic003G388700--Sobic002G079700 Sobic001G473400 Sobic001G473400 Sobic003G388700--Sobic001G473400 Sobic010G002800 Sobic010G002800 Sobic003G388700--Sobic010G002800 Sobic010G258000 Sobic010G258000 Sobic003G388700--Sobic010G258000 Sobic006G041800 Sobic006G041800 Sobic003G388700--Sobic006G041800 Sobic004G186100--Sobic010G002800 Sobic004G186100--Sobic009G206600 Sobic007G022700 Sobic007G022700 Sobic004G186100--Sobic007G022700 Sobic004G186100--Sobic010G258000 Sobic004G186100--Sobic007G003100 Sobic003G222700 Sobic003G222700 Sobic004G186100--Sobic003G222700 Sobic004G186100--Sobic001G073600 Sobic004G186100--Sobic006G203900 Sobic003G085500 Sobic003G085500 Sobic004G186100--Sobic003G085500 Sobic007G003100--Sobic004G039400 Sobic007G048700 Sobic007G048700 Sobic007G003100--Sobic007G048700 Sobic003G167000 Sobic003G167000 Sobic007G003100--Sobic003G167000 Sobic009G112900 Sobic009G112900 Sobic007G003100--Sobic009G112900 Sobic007G003100--Sobic001G443200 Sobic007G003100--Sobic009G206600 Sobic001G060300 Sobic001G060300 Sobic007G003100--Sobic001G060300 Sobic007G003100--Sobic006G203900 Sobic007G003100--Sobic010G040900 Sobic002G255400 Sobic002G255400 Sobic008G018300--Sobic002G255400 Sobic002G352200 Sobic002G352200 Sobic008G018300--Sobic002G352200 Sobic008G018300--Sobic001G387200 Sobic004G173700 Sobic004G173700 Sobic008G018300--Sobic004G173700 Sobic002G420600 Sobic002G420600 Sobic008G018300--Sobic002G420600 Sobic003G260600 Sobic003G260600 Sobic008G018300--Sobic003G260600 Sobic001G282200 Sobic001G282200 Sobic008G018300--Sobic001G282200 Sobic003G129900 Sobic003G129900 Sobic008G018300--Sobic003G129900 Sobic008G018300--Sobic003G016300 Sobic002G217500--Sobic003G016300 Sobic002G217500--Sobic002G352200 Sobic002G217500--Sobic002G255400 Sobic006G153200 Sobic006G153200 Sobic002G217500--Sobic006G153200 Sobic001G219800 Sobic001G219800 Sobic002G217500--Sobic001G219800 Sobic002G217500--Sobic008G018300 Sobic002G217500--Sobic003G260600 Sobic007G023400 Sobic007G023400 Sobic002G217500--Sobic007G023400 Sobic009G218000 Sobic009G218000 Sobic002G217500--Sobic009G218000
Octagon: transcription factors


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