Gene annotation
Transcriptome id Sobic.002G217500.1
Synonym Sb02g025945
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1W0W5D7
Pfam PF00400
Panther DB PTHR11024
NCBI CDD KOG1332; Vesicle coat complex COPII, subunit SEC13
KEGG Orthology K14004; protein transport protein SEC13
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G30050 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os02g04320.2 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G217500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G016300 SFT2, putative, expressed -
2 Sobic.002G352200 succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed K01899: succinyl-CoA synthetase alpha subunit
3 Sobic.002G255400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K09569: FK506-binding protein 2
4 Sobic.006G153200 OsClp7 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
5 Sobic.001G219800 methyltransferase, putative, expressed -
6 Sobic.008G018300 expressed protein K17402: small subunit ribosomal protein S23
7 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
8 Sobic.007G023400 succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit
9 Sobic.009G218000 VIP1 protein, putative, expressed -
10 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
11 Sobic.002G387800 - K12456: anaphase-promoting complex subunit 13
12 Sobic.003G075200 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
13 Sobic.007G014700 Fructokinase-2 (Zm)(PubMedID : 27208977)@kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
14 Sobic.001G309200 fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
15 Sobic.001G347700 protein phosphotase protein, putative, expressed -
16 Sobic.001G192700 major facilitator superfamily domain-containing protein 5, putative, expressed -
17 Sobic.008G057900 OsAPx6 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
18 Sobic.002G420600 nucleoside-triphosphatase, putative, expressed -
19 Sobic.006G203900 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
20 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8


Gene co-expression network
sample Sobic002G217500 Sobic002G217500 Sobic003G016300 Sobic003G016300 Sobic002G217500--Sobic003G016300 Sobic002G352200 Sobic002G352200 Sobic002G217500--Sobic002G352200 Sobic002G255400 Sobic002G255400 Sobic002G217500--Sobic002G255400 Sobic006G153200 Sobic006G153200 Sobic002G217500--Sobic006G153200 Sobic001G219800 Sobic001G219800 Sobic002G217500--Sobic001G219800 Sobic008G018300 Sobic008G018300 Sobic002G217500--Sobic008G018300 Sobic003G260600 Sobic003G260600 Sobic002G217500--Sobic003G260600 Sobic007G023400 Sobic007G023400 Sobic002G217500--Sobic007G023400 Sobic009G218000 Sobic009G218000 Sobic002G217500--Sobic009G218000 Sobic003G016300--Sobic002G352200 Sobic003G016300--Sobic002G217500 Sobic001G192700 Sobic001G192700 Sobic003G016300--Sobic001G192700 Sobic003G016300--Sobic001G219800 Sobic003G016300--Sobic008G018300 Sobic006G203900 Sobic006G203900 Sobic003G016300--Sobic006G203900 Sobic003G016300--Sobic002G255400 Sobic009G211900 Sobic009G211900 Sobic003G016300--Sobic009G211900 Sobic002G420600 Sobic002G420600 Sobic003G016300--Sobic002G420600 Sobic002G352200--Sobic002G420600 Sobic002G352200--Sobic003G016300 Sobic002G352200--Sobic008G018300 Sobic002G352200--Sobic002G255400 Sobic004G173700 Sobic004G173700 Sobic002G352200--Sobic004G173700 Sobic002G352200--Sobic003G260600 Sobic009G224400 Sobic009G224400 Sobic002G352200--Sobic009G224400 Sobic002G124900 Sobic002G124900 Sobic002G352200--Sobic002G124900 Sobic001G073600 Sobic001G073600 Sobic002G352200--Sobic001G073600 Sobic002G255400--Sobic003G260600 Sobic003G089100 Sobic003G089100 Sobic002G255400--Sobic003G089100 Sobic007G014700 Sobic007G014700 Sobic002G255400--Sobic007G014700 Sobic002G255400--Sobic008G018300 Sobic002G255400--Sobic002G420600 Sobic003G201500 Sobic003G201500 Sobic002G255400--Sobic003G201500 Sobic003G013700 Sobic003G013700 Sobic002G255400--Sobic003G013700 Sobic002G255400--Sobic002G352200 Sobic001G387200 Sobic001G387200 Sobic002G255400--Sobic001G387200 Sobic006G153200--Sobic009G218000 Sobic006G153200--Sobic002G217500 Sobic004G100100 Sobic004G100100 Sobic006G153200--Sobic004G100100 Sobic003G075200 Sobic003G075200 Sobic006G153200--Sobic003G075200 Sobic003G167000 Sobic003G167000 Sobic006G153200--Sobic003G167000 Sobic009G107200 Sobic009G107200 Sobic006G153200--Sobic009G107200 Sobic003G113400 Sobic003G113400 Sobic006G153200--Sobic003G113400 Sobic006G153200--Sobic003G260600 Sobic008G011800 Sobic008G011800 Sobic006G153200--Sobic008G011800 Sobic001G352800 Sobic001G352800 Sobic001G219800--Sobic001G352800 Sobic001G219800--Sobic001G192700 Sobic001G219800--Sobic003G016300 Sobic001G219800--Sobic002G255400 Sobic001G219800--Sobic002G217500 Sobic003G074900 Sobic003G074900 Sobic001G219800--Sobic003G074900 Sobic001G219800--Sobic002G420600 Sobic001G219800--Sobic002G352200 Sobic001G219800--Sobic003G075200 Sobic008G018300--Sobic002G255400 Sobic008G018300--Sobic002G352200 Sobic008G018300--Sobic001G387200 Sobic008G018300--Sobic004G173700 Sobic008G018300--Sobic002G420600 Sobic008G018300--Sobic003G260600 Sobic001G282200 Sobic001G282200 Sobic008G018300--Sobic001G282200 Sobic003G129900 Sobic003G129900 Sobic008G018300--Sobic003G129900 Sobic008G018300--Sobic003G016300 Sobic003G260600--Sobic002G255400 Sobic003G260600--Sobic003G201500 Sobic003G260600--Sobic003G089100 Sobic008G132200 Sobic008G132200 Sobic003G260600--Sobic008G132200 Sobic001G378800 Sobic001G378800 Sobic003G260600--Sobic001G378800 Sobic003G372200 Sobic003G372200 Sobic003G260600--Sobic003G372200 Sobic003G260600--Sobic002G420600 Sobic008G072500 Sobic008G072500 Sobic003G260600--Sobic008G072500 Sobic003G260600--Sobic007G014700 Sobic002G395000 Sobic002G395000 Sobic007G023400--Sobic002G395000 Sobic010G032600 Sobic010G032600 Sobic007G023400--Sobic010G032600 Sobic007G023400--Sobic009G224400 Sobic007G171500 Sobic007G171500 Sobic007G023400--Sobic007G171500 Sobic004G297700 Sobic004G297700 Sobic007G023400--Sobic004G297700 Sobic003G135600 Sobic003G135600 Sobic007G023400--Sobic003G135600 Sobic004G202100 Sobic004G202100 Sobic007G023400--Sobic004G202100 Sobic007G023400--Sobic002G217500 Sobic007G023400--Sobic001G073600 Sobic009G218000--Sobic006G153200 Sobic001G309200 Sobic001G309200 Sobic009G218000--Sobic001G309200 Sobic009G218000--Sobic003G167000 Sobic009G218000--Sobic002G217500 Sobic002G422400 Sobic002G422400 Sobic009G218000--Sobic002G422400 Sobic009G218000--Sobic001G352800 Sobic001G485300 Sobic001G485300 Sobic009G218000--Sobic001G485300 Sobic001G155200 Sobic001G155200 Sobic009G218000--Sobic001G155200 Sobic009G218000--Sobic008G011800
Octagon: transcription factors


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