Gene annotation
Transcriptome id Sobic.002G352200.1
Synonym Sb02g037420
Functional annotation succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed
UniProt A0A1B6QF74
Pfam PF02629 PF00549
Panther DB PTHR11117:SF9 PTHR11117
NCBI CDD -
KEGG Orthology K01899; succinyl-CoA synthetase alpha subunit
Gene Ontology GO:0003824; catalytic activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT5G23250 : Succinyl-CoA ligase, alpha subunit
RAP-DB (Rice) LOC_Os07g38970.1 : succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a048499 , Zm00025a014986
Brachypodium KQK15546
Barley HORVU7Hr1G094160.1 , HORVU2Hr1G036950.2 , HORVU2Hr1G036950.1 , HORVU2Hr1G071160.1
Wheat TraesCS2A02G187300 , TraesCS2D02G200600 , TraesCS2B02G220000
Populus -


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cDNA sequences
Sobic.002G352200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G420600 nucleoside-triphosphatase, putative, expressed -
2 Sobic.003G016300 SFT2, putative, expressed -
3 Sobic.008G018300 expressed protein K17402: small subunit ribosomal protein S23
4 Sobic.002G255400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K09569: FK506-binding protein 2
5 Sobic.004G173700 SLL1 protein, putative, expressed -
6 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
7 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
8 Sobic.002G124900 expressed protein K02138: ATPeF0D, ATP5H, F-type H+-transporting ATPase subunit d
9 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8
10 Sobic.007G014700 Fructokinase-2 (Zm)(PubMedID : 27208977)@kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
11 Sobic.002G217500 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
12 Sobic.004G218600 succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed K01900: succinyl-CoA synthetase beta subunit
13 Sobic.007G013900 rickettsia 17 kDa surface antigen family protein, expressed -
14 Sobic.010G231700 expressed protein -
15 Sobic.004G261800 sugar-responsive gene(PubMedID : 25496467)@pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
16 Sobic.001G387200 expressed protein -
17 Sobic.003G028200 expressed protein -
18 Sobic.003G129900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
19 Sobic.001G457000 ATP synthase gamma chain, putative, expressed K02136: ATPeF1G, ATP5C1, F-type H+-transporting ATPase subunit gamma
20 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1


Gene co-expression network
sample Sobic002G352200 Sobic002G352200 Sobic002G420600 Sobic002G420600 Sobic002G352200--Sobic002G420600 Sobic003G016300 Sobic003G016300 Sobic002G352200--Sobic003G016300 Sobic008G018300 Sobic008G018300 Sobic002G352200--Sobic008G018300 Sobic002G255400 Sobic002G255400 Sobic002G352200--Sobic002G255400 Sobic004G173700 Sobic004G173700 Sobic002G352200--Sobic004G173700 Sobic003G260600 Sobic003G260600 Sobic002G352200--Sobic003G260600 Sobic009G224400 Sobic009G224400 Sobic002G352200--Sobic009G224400 Sobic002G124900 Sobic002G124900 Sobic002G352200--Sobic002G124900 Sobic001G073600 Sobic001G073600 Sobic002G352200--Sobic001G073600 Sobic003G089100 Sobic003G089100 Sobic002G420600--Sobic003G089100 Sobic002G420600--Sobic004G173700 Sobic006G120900 Sobic006G120900 Sobic002G420600--Sobic006G120900 Sobic003G201500 Sobic003G201500 Sobic002G420600--Sobic003G201500 Sobic002G420600--Sobic002G352200 Sobic002G420600--Sobic002G255400 Sobic001G303900 Sobic001G303900 Sobic002G420600--Sobic001G303900 Sobic002G420600--Sobic003G260600 Sobic003G372200 Sobic003G372200 Sobic002G420600--Sobic003G372200 Sobic003G016300--Sobic002G352200 Sobic002G217500 Sobic002G217500 Sobic003G016300--Sobic002G217500 Sobic001G192700 Sobic001G192700 Sobic003G016300--Sobic001G192700 Sobic001G219800 Sobic001G219800 Sobic003G016300--Sobic001G219800 Sobic003G016300--Sobic008G018300 Sobic006G203900 Sobic006G203900 Sobic003G016300--Sobic006G203900 Sobic003G016300--Sobic002G255400 Sobic009G211900 Sobic009G211900 Sobic003G016300--Sobic009G211900 Sobic003G016300--Sobic002G420600 Sobic008G018300--Sobic002G255400 Sobic008G018300--Sobic002G352200 Sobic001G387200 Sobic001G387200 Sobic008G018300--Sobic001G387200 Sobic008G018300--Sobic004G173700 Sobic008G018300--Sobic002G420600 Sobic008G018300--Sobic003G260600 Sobic001G282200 Sobic001G282200 Sobic008G018300--Sobic001G282200 Sobic003G129900 Sobic003G129900 Sobic008G018300--Sobic003G129900 Sobic008G018300--Sobic003G016300 Sobic002G255400--Sobic003G260600 Sobic002G255400--Sobic003G089100 Sobic007G014700 Sobic007G014700 Sobic002G255400--Sobic007G014700 Sobic002G255400--Sobic008G018300 Sobic002G255400--Sobic002G420600 Sobic002G255400--Sobic003G201500 Sobic003G013700 Sobic003G013700 Sobic002G255400--Sobic003G013700 Sobic002G255400--Sobic002G352200 Sobic002G255400--Sobic001G387200 Sobic003G137600 Sobic003G137600 Sobic004G173700--Sobic003G137600 Sobic004G173700--Sobic006G120900 Sobic004G173700--Sobic002G420600 Sobic004G173700--Sobic001G387200 Sobic001G365700 Sobic001G365700 Sobic004G173700--Sobic001G365700 Sobic004G173700--Sobic003G129900 Sobic007G212100 Sobic007G212100 Sobic004G173700--Sobic007G212100 Sobic004G173700--Sobic001G303900 Sobic004G173700--Sobic008G018300 Sobic003G260600--Sobic002G255400 Sobic003G260600--Sobic003G201500 Sobic003G260600--Sobic003G089100 Sobic008G132200 Sobic008G132200 Sobic003G260600--Sobic008G132200 Sobic001G378800 Sobic001G378800 Sobic003G260600--Sobic001G378800 Sobic003G260600--Sobic003G372200 Sobic003G260600--Sobic002G420600 Sobic008G072500 Sobic008G072500 Sobic003G260600--Sobic008G072500 Sobic003G260600--Sobic007G014700 Sobic009G224400--Sobic001G073600 Sobic009G191400 Sobic009G191400 Sobic009G224400--Sobic009G191400 Sobic002G395000 Sobic002G395000 Sobic009G224400--Sobic002G395000 Sobic007G119600 Sobic007G119600 Sobic009G224400--Sobic007G119600 Sobic003G135600 Sobic003G135600 Sobic009G224400--Sobic003G135600 Sobic001G458800 Sobic001G458800 Sobic009G224400--Sobic001G458800 Sobic004G155100 Sobic004G155100 Sobic009G224400--Sobic004G155100 Sobic003G034900 Sobic003G034900 Sobic009G224400--Sobic003G034900 Sobic002G262200 Sobic002G262200 Sobic009G224400--Sobic002G262200 Sobic002G124900--Sobic002G352200 Sobic004G261800 Sobic004G261800 Sobic002G124900--Sobic004G261800 Sobic010G231700 Sobic010G231700 Sobic002G124900--Sobic010G231700 Sobic002G124900--Sobic002G420600 Sobic002G124900--Sobic003G013700 Sobic002G124900--Sobic001G303900 Sobic002G124900--Sobic004G173700 Sobic002G124900--Sobic007G014700 Sobic004G247500 Sobic004G247500 Sobic002G124900--Sobic004G247500 Sobic001G073600--Sobic009G191400 Sobic001G073600--Sobic009G224400 Sobic001G073600--Sobic003G135600 Sobic001G073600--Sobic002G395000 Sobic004G344800 Sobic004G344800 Sobic001G073600--Sobic004G344800 Sobic001G073600--Sobic007G119600 Sobic004G347600 Sobic004G347600 Sobic001G073600--Sobic004G347600 Sobic001G073600--Sobic001G458800 Sobic001G073600--Sobic004G155100
Octagon: transcription factors


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