Gene annotation
Transcriptome id Sobic.004G218600.1
Synonym Sb04g026360
Functional annotation succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed
UniProt C5XXS0
Pfam PF13549 PF00549
Panther DB PTHR11815 PTHR11815:SF1
NCBI CDD -
KEGG Orthology K01900; succinyl-CoA synthetase beta subunit
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT2G20420 : ATP citrate lyase (ACL) family protein
RAP-DB (Rice) LOC_Os02g40830.1 : succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a021115 , Zm00025a032004
Brachypodium KQK00391 , KQK00392
Barley HORVU6Hr1G058210.1 , HORVU6Hr1G058210.2 , HORVU6Hr1G058210.3 , HORVU6Hr1G058210.4
Wheat TraesCS6B02G255800 , TraesCS6D02G209200 , TraesCS6A02G225900 , TraesCS6D02G209200
Populus -


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cDNA sequences
Sobic.004G218600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G153000 oxidoreductase domain protein, putative, expressed -
2 Sobic.001G457000 ATP synthase gamma chain, putative, expressed K02136: ATPeF1G, ATP5C1, F-type H+-transporting ATPase subunit gamma
3 Sobic.002G352200 succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed K01899: succinyl-CoA synthetase alpha subunit
4 Sobic.001G543400 phosphoglycerate mutase, putative, expressed -
5 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
6 Sobic.002G070300 expressed protein -
7 Sobic.002G255400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K09569: FK506-binding protein 2
8 Sobic.003G049200 NADH-cytochrome b5 reductase, putative, expressed K00326: cytochrome-b5 reductase
9 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1
10 Sobic.008G018300 expressed protein K17402: small subunit ribosomal protein S23
11 Sobic.002G090500 calreticulin precursor protein, putative, expressed K08057: calreticulin
12 Sobic.002G232400 clathrin adaptor complex small chain domain containing protein, expressed -
13 Sobic.008G072500 SAM-dependent methyltransferase, putative, expressed K18162: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5
14 Sobic.001G011000 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
15 Sobic.008G057900 OsAPx6 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
16 Sobic.002G420600 nucleoside-triphosphatase, putative, expressed -
17 Sobic.003G028200 expressed protein -
18 Sobic.004G093600 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)
19 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
20 Sobic.001G073600 4Fe-4S binding domain containing protein, expressed K03941: NADH dehydrogenase (ubiquinone) Fe-S protein 8


Gene co-expression network
sample Sobic004G218600 Sobic004G218600 Sobic002G153000 Sobic002G153000 Sobic004G218600--Sobic002G153000 Sobic001G457000 Sobic001G457000 Sobic004G218600--Sobic001G457000 Sobic002G352200 Sobic002G352200 Sobic004G218600--Sobic002G352200 Sobic001G543400 Sobic001G543400 Sobic004G218600--Sobic001G543400 Sobic003G260600 Sobic003G260600 Sobic004G218600--Sobic003G260600 Sobic002G070300 Sobic002G070300 Sobic004G218600--Sobic002G070300 Sobic002G255400 Sobic002G255400 Sobic004G218600--Sobic002G255400 Sobic003G049200 Sobic003G049200 Sobic004G218600--Sobic003G049200 Sobic007G119600 Sobic007G119600 Sobic004G218600--Sobic007G119600 Sobic002G090500 Sobic002G090500 Sobic002G153000--Sobic002G090500 Sobic002G153000--Sobic001G543400 Sobic002G153000--Sobic004G218600 Sobic002G232400 Sobic002G232400 Sobic002G153000--Sobic002G232400 Sobic002G153000--Sobic002G070300 Sobic008G057900 Sobic008G057900 Sobic002G153000--Sobic008G057900 Sobic004G261800 Sobic004G261800 Sobic002G153000--Sobic004G261800 Sobic001G011000 Sobic001G011000 Sobic002G153000--Sobic001G011000 Sobic001G352800 Sobic001G352800 Sobic002G153000--Sobic001G352800 Sobic001G457000--Sobic007G119600 Sobic004G093600 Sobic004G093600 Sobic001G457000--Sobic004G093600 Sobic001G457000--Sobic004G218600 Sobic009G259200 Sobic009G259200 Sobic001G457000--Sobic009G259200 Sobic009G224400 Sobic009G224400 Sobic001G457000--Sobic009G224400 Sobic003G034900 Sobic003G034900 Sobic001G457000--Sobic003G034900 Sobic001G387200 Sobic001G387200 Sobic001G457000--Sobic001G387200 Sobic010G032600 Sobic010G032600 Sobic001G457000--Sobic010G032600 Sobic007G171500 Sobic007G171500 Sobic001G457000--Sobic007G171500 Sobic002G420600 Sobic002G420600 Sobic002G352200--Sobic002G420600 Sobic003G016300 Sobic003G016300 Sobic002G352200--Sobic003G016300 Sobic008G018300 Sobic008G018300 Sobic002G352200--Sobic008G018300 Sobic002G352200--Sobic002G255400 Sobic004G173700 Sobic004G173700 Sobic002G352200--Sobic004G173700 Sobic002G352200--Sobic003G260600 Sobic002G352200--Sobic009G224400 Sobic002G124900 Sobic002G124900 Sobic002G352200--Sobic002G124900 Sobic001G073600 Sobic001G073600 Sobic002G352200--Sobic001G073600 Sobic001G543400--Sobic002G153000 Sobic001G543400--Sobic002G070300 Sobic001G543400--Sobic008G057900 Sobic001G543400--Sobic003G260600 Sobic004G017900 Sobic004G017900 Sobic001G543400--Sobic004G017900 Sobic007G014700 Sobic007G014700 Sobic001G543400--Sobic007G014700 Sobic001G543400--Sobic004G218600 Sobic001G543400--Sobic004G261800 Sobic008G132200 Sobic008G132200 Sobic001G543400--Sobic008G132200 Sobic003G260600--Sobic002G255400 Sobic003G201500 Sobic003G201500 Sobic003G260600--Sobic003G201500 Sobic003G089100 Sobic003G089100 Sobic003G260600--Sobic003G089100 Sobic003G260600--Sobic008G132200 Sobic001G378800 Sobic001G378800 Sobic003G260600--Sobic001G378800 Sobic003G372200 Sobic003G372200 Sobic003G260600--Sobic003G372200 Sobic003G260600--Sobic002G420600 Sobic008G072500 Sobic008G072500 Sobic003G260600--Sobic008G072500 Sobic003G260600--Sobic007G014700 Sobic002G070300--Sobic008G132200 Sobic007G118500 Sobic007G118500 Sobic002G070300--Sobic007G118500 Sobic002G070300--Sobic001G543400 Sobic002G070300--Sobic003G260600 Sobic002G070300--Sobic001G011000 Sobic003G159700 Sobic003G159700 Sobic002G070300--Sobic003G159700 Sobic002G154800 Sobic002G154800 Sobic002G070300--Sobic002G154800 Sobic002G070300--Sobic001G378800 Sobic002G070300--Sobic002G153000 Sobic002G255400--Sobic003G260600 Sobic002G255400--Sobic003G089100 Sobic002G255400--Sobic007G014700 Sobic002G255400--Sobic008G018300 Sobic002G255400--Sobic002G420600 Sobic002G255400--Sobic003G201500 Sobic003G013700 Sobic003G013700 Sobic002G255400--Sobic003G013700 Sobic002G255400--Sobic002G352200 Sobic002G255400--Sobic001G387200 Sobic003G049200--Sobic008G072500 Sobic010G133400 Sobic010G133400 Sobic003G049200--Sobic010G133400 Sobic003G049200--Sobic001G378800 Sobic003G049200--Sobic003G260600 Sobic003G049200--Sobic002G255400 Sobic007G111300 Sobic007G111300 Sobic003G049200--Sobic007G111300 Sobic003G049200--Sobic001G457000 Sobic006G232800 Sobic006G232800 Sobic003G049200--Sobic006G232800 Sobic003G049200--Sobic007G118500 Sobic007G119600--Sobic009G224400 Sobic009G191400 Sobic009G191400 Sobic007G119600--Sobic009G191400 Sobic006G041800 Sobic006G041800 Sobic007G119600--Sobic006G041800 Sobic007G119600--Sobic001G457000 Sobic007G119600--Sobic001G073600 Sobic007G119600--Sobic002G255400 Sobic003G028200 Sobic003G028200 Sobic007G119600--Sobic003G028200 Sobic003G388700 Sobic003G388700 Sobic007G119600--Sobic003G388700 Sobic007G119600--Sobic003G260600
Octagon: transcription factors


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