Gene annotation
Transcriptome id Sobic.001G011000.1
Synonym Sb01g001080
Functional annotation elongation factor Tu, putative, expressed
UniProt C5WSV4
Pfam PF03144 PF03143 PF00009
Panther DB PTHR23115 PTHR23115:SF155
NCBI CDD -
KEGG Orthology K02358; tuf, elongation factor Tu
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT4G02930 : GTP binding Elongation factor Tu family protein
RAP-DB (Rice) LOC_Os03g63410.1 : elongation factor Tu, putative, expressed
MaizeGDB (Corn) Zm00025a009037 , Zm00025a016326 , Zm00025a013396
Brachypodium KQK12090
Barley HORVU5Hr1G122350.4 , HORVU5Hr1G122350.5 , HORVU5Hr1G122350.1 , HORVU5Hr1G122350.2 , HORVU5Hr1G122350.3 , HORVU2Hr1G040970.1 , HORVU2Hr1G040960.1 , HORVU0Hr1G026370.1 , HORVU2Hr1G079480.2 , HORVU3Hr1G096700.1
Wheat TraesCS5D02G542300 , TraesCS5B02G545200 , TraesCS1B02G431000 , TraesCS5B02G545300 , TraesCS4A02G330400 , TraesCS5B02G545300
Populus -


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cDNA sequences
Sobic.001G011000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
2 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
3 Sobic.002G071100 expressed protein K17408: DAP3, small subunit ribosomal protein S29
4 Sobic.004G356300 expressed protein -
5 Sobic.002G070300 expressed protein -
6 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
7 Sobic.002G281600 protein of unknown function domain containing protein, expressed -
8 Sobic.002G153000 oxidoreductase domain protein, putative, expressed -
9 Sobic.008G057900 OsAPx6 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
10 Sobic.004G007700 pentatricopeptide, putative, expressed -
11 Sobic.001G543400 phosphoglycerate mutase, putative, expressed -
12 Sobic.002G090500 calreticulin precursor protein, putative, expressed K08057: calreticulin
13 Sobic.003G075200 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
14 Sobic.004G218600 succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed K01900: succinyl-CoA synthetase beta subunit
15 Sobic.008G072500 SAM-dependent methyltransferase, putative, expressed K18162: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5
16 Sobic.003G159700 ATKINESIN-13A/KINESIN-13A, putative, expressed K10393: KIF2_24, kinesin family member 2/24
17 Sobic.001G323400 expressed protein -
18 Sobic.007G118500 galactosyltransferase family protein, putative, expressed -
19 Sobic.002G154800 glycosyl transferase, group 1 domain containing protein, expressed -
20 Sobic.003G049200 NADH-cytochrome b5 reductase, putative, expressed K00326: cytochrome-b5 reductase


Gene co-expression network
sample Sobic001G011000 Sobic001G011000 Sobic004G212100 Sobic004G212100 Sobic001G011000--Sobic004G212100 Sobic002G367800 Sobic002G367800 Sobic001G011000--Sobic002G367800 Sobic002G071100 Sobic002G071100 Sobic001G011000--Sobic002G071100 Sobic004G356300 Sobic004G356300 Sobic001G011000--Sobic004G356300 Sobic002G070300 Sobic002G070300 Sobic001G011000--Sobic002G070300 Sobic009G041800 Sobic009G041800 Sobic001G011000--Sobic009G041800 Sobic002G281600 Sobic002G281600 Sobic001G011000--Sobic002G281600 Sobic002G153000 Sobic002G153000 Sobic001G011000--Sobic002G153000 Sobic008G057900 Sobic008G057900 Sobic001G011000--Sobic008G057900 Sobic004G212100--Sobic002G367800 Sobic004G212100--Sobic001G011000 Sobic004G212100--Sobic009G041800 Sobic003G388900 Sobic003G388900 Sobic004G212100--Sobic003G388900 Sobic004G212100--Sobic002G070300 Sobic001G161700 Sobic001G161700 Sobic004G212100--Sobic001G161700 Sobic004G034300 Sobic004G034300 Sobic004G212100--Sobic004G034300 Sobic001G522000 Sobic001G522000 Sobic004G212100--Sobic001G522000 Sobic001G490500 Sobic001G490500 Sobic004G212100--Sobic001G490500 Sobic002G367800--Sobic004G212100 Sobic002G367800--Sobic001G011000 Sobic002G367800--Sobic003G388900 Sobic002G367800--Sobic009G041800 Sobic002G367800--Sobic001G522000 Sobic002G367800--Sobic004G356300 Sobic001G214900 Sobic001G214900 Sobic002G367800--Sobic001G214900 Sobic002G367800--Sobic002G071100 Sobic002G367800--Sobic002G070300 Sobic002G071100--Sobic001G011000 Sobic001G380600 Sobic001G380600 Sobic002G071100--Sobic001G380600 Sobic002G071100--Sobic002G367800 Sobic003G202100 Sobic003G202100 Sobic002G071100--Sobic003G202100 Sobic001G304000 Sobic001G304000 Sobic002G071100--Sobic001G304000 Sobic002G071100--Sobic004G356300 Sobic002G071100--Sobic004G212100 Sobic002G071100--Sobic009G041800 Sobic002G071100--Sobic003G388900 Sobic004G007700 Sobic004G007700 Sobic004G356300--Sobic004G007700 Sobic004G356300--Sobic001G011000 Sobic003G075200 Sobic003G075200 Sobic004G356300--Sobic003G075200 Sobic004G356300--Sobic002G367800 Sobic002G090500 Sobic002G090500 Sobic004G356300--Sobic002G090500 Sobic004G356300--Sobic008G057900 Sobic001G176900 Sobic001G176900 Sobic004G356300--Sobic001G176900 Sobic010G134100 Sobic010G134100 Sobic004G356300--Sobic010G134100 Sobic004G356300--Sobic002G071100 Sobic008G132200 Sobic008G132200 Sobic002G070300--Sobic008G132200 Sobic007G118500 Sobic007G118500 Sobic002G070300--Sobic007G118500 Sobic001G543400 Sobic001G543400 Sobic002G070300--Sobic001G543400 Sobic003G260600 Sobic003G260600 Sobic002G070300--Sobic003G260600 Sobic002G070300--Sobic001G011000 Sobic003G159700 Sobic003G159700 Sobic002G070300--Sobic003G159700 Sobic002G154800 Sobic002G154800 Sobic002G070300--Sobic002G154800 Sobic001G378800 Sobic001G378800 Sobic002G070300--Sobic001G378800 Sobic002G070300--Sobic002G153000 Sobic003G130000 Sobic003G130000 Sobic009G041800--Sobic003G130000 Sobic009G041800--Sobic004G212100 Sobic009G041800--Sobic001G011000 Sobic009G041800--Sobic002G367800 Sobic001G167500 Sobic001G167500 Sobic009G041800--Sobic001G167500 Sobic001G413100 Sobic001G413100 Sobic009G041800--Sobic001G413100 Sobic001G268300 Sobic001G268300 Sobic009G041800--Sobic001G268300 Sobic003G113400 Sobic003G113400 Sobic009G041800--Sobic003G113400 Sobic009G041800--Sobic010G134100 Sobic002G281600--Sobic001G011000 Sobic002G281600--Sobic001G543400 Sobic002G281600--Sobic002G153000 Sobic001G529200 Sobic001G529200 Sobic002G281600--Sobic001G529200 Sobic002G281600--Sobic002G070300 Sobic004G035400 Sobic004G035400 Sobic002G281600--Sobic004G035400 Sobic002G186200 Sobic002G186200 Sobic002G281600--Sobic002G186200 Sobic004G261800 Sobic004G261800 Sobic002G281600--Sobic004G261800 Sobic002G281600--Sobic004G356300 Sobic002G153000--Sobic002G090500 Sobic002G153000--Sobic001G543400 Sobic004G218600 Sobic004G218600 Sobic002G153000--Sobic004G218600 Sobic002G232400 Sobic002G232400 Sobic002G153000--Sobic002G232400 Sobic002G153000--Sobic002G070300 Sobic002G153000--Sobic008G057900 Sobic002G153000--Sobic004G261800 Sobic002G153000--Sobic001G011000 Sobic001G352800 Sobic001G352800 Sobic002G153000--Sobic001G352800 Sobic008G057900--Sobic001G543400 Sobic008G057900--Sobic002G153000 Sobic008G057900--Sobic003G075200 Sobic008G057900--Sobic001G011000 Sobic008G057900--Sobic004G356300 Sobic002G186300 Sobic002G186300 Sobic008G057900--Sobic002G186300 Sobic008G057900--Sobic002G367800 Sobic002G217500 Sobic002G217500 Sobic008G057900--Sobic002G217500 Sobic008G057900--Sobic002G090500
Octagon: transcription factors


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