Gene annotation
Transcriptome id Sobic.009G041800.2
Synonym Sb09g003510
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1B6P6F8
Pfam PF01535 PF13812 PF13041
Panther DB PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G35850 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os05g05320.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a023007 , Zm00025a038092
Brachypodium PNT71838
Barley HORVU1Hr1G019600.7 , HORVU1Hr1G019600.6 , HORVU1Hr1G019600.5 , HORVU1Hr1G019600.4 , HORVU1Hr1G019600.3 , HORVU1Hr1G019600.2 , HORVU1Hr1G019600.9 , HORVU1Hr1G019600.8
Wheat TraesCS1A02G109300 , TraesCS1D02G091000 , TraesCS1B02G108800
Populus -


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cDNA sequences
Sobic.009G041800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G130000 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
2 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
3 Sobic.001G011000 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
4 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
5 Sobic.001G167500 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
6 Sobic.001G413100 nucleotide binding protein, putative, expressed -
7 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
8 Sobic.003G113400 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
9 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
10 Sobic.002G070300 expressed protein -
11 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
12 Sobic.003G388900 PPR repeat domain containing protein, putative, expressed -
13 Sobic.001G522000 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
14 Sobic.002G071100 expressed protein K17408: DAP3, small subunit ribosomal protein S29
15 Sobic.009G063800 ATP10 protein, expressed K18192: mitochondrial ATPase complex subunit ATP10
16 Sobic.007G226800 -(PubMedID : 26976818)@dicarboxylate transporter 5(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
17 Sobic.001G343000 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
18 Sobic.003G205400 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
19 Sobic.010G080900 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
20 Sobic.001G392200 CAS1 domain-containing protein 1 precursor, putative, expressed -


Gene co-expression network
sample Sobic009G041800 Sobic009G041800 Sobic003G130000 Sobic003G130000 Sobic009G041800--Sobic003G130000 Sobic004G212100 Sobic004G212100 Sobic009G041800--Sobic004G212100 Sobic001G011000 Sobic001G011000 Sobic009G041800--Sobic001G011000 Sobic002G367800 Sobic002G367800 Sobic009G041800--Sobic002G367800 Sobic001G167500 Sobic001G167500 Sobic009G041800--Sobic001G167500 Sobic001G413100 Sobic001G413100 Sobic009G041800--Sobic001G413100 Sobic001G268300 Sobic001G268300 Sobic009G041800--Sobic001G268300 Sobic003G113400 Sobic003G113400 Sobic009G041800--Sobic003G113400 Sobic010G134100 Sobic010G134100 Sobic009G041800--Sobic010G134100 Sobic003G130000--Sobic009G041800 Sobic003G130000--Sobic001G167500 Sobic003G235700 Sobic003G235700 Sobic003G130000--Sobic003G235700 Sobic003G130000--Sobic010G134100 Sobic006G251600 Sobic006G251600 Sobic003G130000--Sobic006G251600 Sobic003G205400 Sobic003G205400 Sobic003G130000--Sobic003G205400 Sobic003G008600 Sobic003G008600 Sobic003G130000--Sobic003G008600 Sobic005G098000 Sobic005G098000 Sobic003G130000--Sobic005G098000 Sobic003G130000--Sobic001G268300 Sobic004G212100--Sobic002G367800 Sobic004G212100--Sobic001G011000 Sobic004G212100--Sobic009G041800 Sobic003G388900 Sobic003G388900 Sobic004G212100--Sobic003G388900 Sobic002G070300 Sobic002G070300 Sobic004G212100--Sobic002G070300 Sobic001G161700 Sobic001G161700 Sobic004G212100--Sobic001G161700 Sobic004G034300 Sobic004G034300 Sobic004G212100--Sobic004G034300 Sobic001G522000 Sobic001G522000 Sobic004G212100--Sobic001G522000 Sobic001G490500 Sobic001G490500 Sobic004G212100--Sobic001G490500 Sobic001G011000--Sobic004G212100 Sobic001G011000--Sobic002G367800 Sobic002G071100 Sobic002G071100 Sobic001G011000--Sobic002G071100 Sobic004G356300 Sobic004G356300 Sobic001G011000--Sobic004G356300 Sobic001G011000--Sobic002G070300 Sobic001G011000--Sobic009G041800 Sobic002G281600 Sobic002G281600 Sobic001G011000--Sobic002G281600 Sobic002G153000 Sobic002G153000 Sobic001G011000--Sobic002G153000 Sobic008G057900 Sobic008G057900 Sobic001G011000--Sobic008G057900 Sobic002G367800--Sobic004G212100 Sobic002G367800--Sobic001G011000 Sobic002G367800--Sobic003G388900 Sobic002G367800--Sobic009G041800 Sobic002G367800--Sobic001G522000 Sobic002G367800--Sobic004G356300 Sobic001G214900 Sobic001G214900 Sobic002G367800--Sobic001G214900 Sobic002G367800--Sobic002G071100 Sobic002G367800--Sobic002G070300 Sobic001G167500--Sobic010G134100 Sobic001G167500--Sobic001G413100 Sobic001G167500--Sobic009G041800 Sobic001G167500--Sobic002G367800 Sobic001G176900 Sobic001G176900 Sobic001G167500--Sobic001G176900 Sobic001G167500--Sobic003G130000 Sobic004G082700 Sobic004G082700 Sobic001G167500--Sobic004G082700 Sobic010G197200 Sobic010G197200 Sobic001G167500--Sobic010G197200 Sobic001G167500--Sobic001G214900 Sobic001G413100--Sobic010G134100 Sobic001G413100--Sobic001G167500 Sobic001G413100--Sobic009G041800 Sobic008G084100 Sobic008G084100 Sobic001G413100--Sobic008G084100 Sobic004G069400 Sobic004G069400 Sobic001G413100--Sobic004G069400 Sobic001G413100--Sobic001G176900 Sobic002G304400 Sobic002G304400 Sobic001G413100--Sobic002G304400 Sobic001G413100--Sobic003G388900 Sobic003G388700 Sobic003G388700 Sobic001G413100--Sobic003G388700 Sobic001G268300--Sobic009G041800 Sobic008G179000 Sobic008G179000 Sobic001G268300--Sobic008G179000 Sobic006G262800 Sobic006G262800 Sobic001G268300--Sobic006G262800 Sobic002G362200 Sobic002G362200 Sobic001G268300--Sobic002G362200 Sobic008G031200 Sobic008G031200 Sobic001G268300--Sobic008G031200 Sobic003G142400 Sobic003G142400 Sobic001G268300--Sobic003G142400 Sobic010G252200 Sobic010G252200 Sobic001G268300--Sobic010G252200 Sobic004G282500 Sobic004G282500 Sobic001G268300--Sobic004G282500 Sobic005G078700 Sobic005G078700 Sobic001G268300--Sobic005G078700 Sobic003G167000 Sobic003G167000 Sobic003G113400--Sobic003G167000 Sobic003G113400--Sobic009G041800 Sobic004G334200 Sobic004G334200 Sobic003G113400--Sobic004G334200 Sobic007G191600 Sobic007G191600 Sobic003G113400--Sobic007G191600 Sobic001G203600 Sobic001G203600 Sobic003G113400--Sobic001G203600 Sobic004G043600 Sobic004G043600 Sobic003G113400--Sobic004G043600 Sobic002G402500 Sobic002G402500 Sobic003G113400--Sobic002G402500 Sobic010G250000 Sobic010G250000 Sobic003G113400--Sobic010G250000 Sobic001G052100 Sobic001G052100 Sobic003G113400--Sobic001G052100 Sobic010G134100--Sobic001G167500 Sobic010G134100--Sobic001G413100 Sobic010G134100--Sobic001G176900 Sobic010G134100--Sobic001G214900 Sobic001G493400 Sobic001G493400 Sobic010G134100--Sobic001G493400 Sobic010G134100--Sobic004G356300 Sobic010G134100--Sobic002G367800 Sobic010G134100--Sobic009G041800 Sobic010G134100--Sobic004G082700
Octagon: transcription factors


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