Gene annotation
Transcriptome id Sobic.002G182000.1
Synonym Sb02g023040
Functional annotation cwfJ-like family protein, putative, expressed
UniProt A0A1B6QC64
Pfam PF04676 PF04677
Panther DB PTHR12072 PTHR12072:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G56900 : CwfJ-like family protein / zinc finger (CCCH-type) family protein
RAP-DB (Rice) LOC_Os09g19940.1 : cwfJ-like family protein, putative, expressed
MaizeGDB (Corn) Zm00025a046688
Brachypodium KQJ89959 , KQJ89999 , KQJ89998
Barley HORVU5Hr1G057610.10 , HORVU5Hr1G057610.11 , HORVU5Hr1G057610.12 , HORVU5Hr1G057610.13 , HORVU5Hr1G057610.14 , HORVU5Hr1G057610.15 , HORVU5Hr1G057610.16 , HORVU5Hr1G057610.2 , HORVU5Hr1G057610.3 , HORVU5Hr1G057610.1 , HORVU5Hr1G057610.6 , HORVU5Hr1G057610.7 , HORVU5Hr1G057610.4 , HORVU5Hr1G057610.5 , HORVU5Hr1G057610.8 , HORVU5Hr1G057610.9
Wheat TraesCS5A02G192000 , TraesCS5D02G198900 , TraesCS5B02G191100
Populus -


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cDNA sequences
Sobic.002G182000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G063800 ATP10 protein, expressed K18192: mitochondrial ATPase complex subunit ATP10
2 Sobic.002G399900 OsRhmbd13 - Putative Rhomboid homologue, expressed -
3 Sobic.001G343000 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
4 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
5 Sobic.007G146600 conserved oligomeric Golgi complex component 3, putative, expressed -
6 Sobic.003G130900 glucosidase II beta subunit-like domain containing protein, expressed K08288: protein kinase C substrate 80K-H
7 Sobic.002G066800 RNA ligase isoform 1, putative, expressed -
8 Sobic.010G172400 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
9 Sobic.003G113300 expressed protein -
10 Sobic.003G393200 expressed protein -
11 Sobic.003G120700 glycosyl transferase, group 1 domain containing protein, expressed -
12 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
13 Sobic.006G191200 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
14 Sobic.003G396800 expressed protein K17413: small subunit ribosomal protein S35
15 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
16 Sobic.003G010900 expressed protein -
17 Sobic.003G113400 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
18 Sobic.001G012900 brefeldin A-sensitive Golgi protein-like, putative, expressed -
19 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial
20 Sobic.003G005900 abscisic acid insensitive 8, putative, expressed -


Gene co-expression network
sample Sobic002G182000 Sobic002G182000 Sobic009G063800 Sobic009G063800 Sobic002G182000--Sobic009G063800 Sobic002G399900 Sobic002G399900 Sobic002G182000--Sobic002G399900 Sobic001G343000 Sobic001G343000 Sobic002G182000--Sobic001G343000 Sobic001G203600 Sobic001G203600 Sobic002G182000--Sobic001G203600 Sobic007G146600 Sobic007G146600 Sobic002G182000--Sobic007G146600 Sobic003G130900 Sobic003G130900 Sobic002G182000--Sobic003G130900 Sobic002G066800 Sobic002G066800 Sobic002G182000--Sobic002G066800 Sobic010G172400 Sobic010G172400 Sobic002G182000--Sobic010G172400 Sobic003G113300 Sobic003G113300 Sobic002G182000--Sobic003G113300 Sobic009G063800--Sobic002G182000 Sobic010G250000 Sobic010G250000 Sobic009G063800--Sobic010G250000 Sobic009G063800--Sobic007G146600 Sobic001G309200 Sobic001G309200 Sobic009G063800--Sobic001G309200 Sobic002G322400 Sobic002G322400 Sobic009G063800--Sobic002G322400 Sobic010G018900 Sobic010G018900 Sobic009G063800--Sobic010G018900 Sobic009G063800--Sobic001G203600 Sobic002G348400 Sobic002G348400 Sobic009G063800--Sobic002G348400 Sobic008G072500 Sobic008G072500 Sobic009G063800--Sobic008G072500 Sobic006G265600 Sobic006G265600 Sobic002G399900--Sobic006G265600 Sobic002G399900--Sobic010G172400 Sobic002G399900--Sobic002G182000 Sobic002G142700 Sobic002G142700 Sobic002G399900--Sobic002G142700 Sobic003G222700 Sobic003G222700 Sobic002G399900--Sobic003G222700 Sobic001G115500 Sobic001G115500 Sobic002G399900--Sobic001G115500 Sobic001G474400 Sobic001G474400 Sobic002G399900--Sobic001G474400 Sobic001G123600 Sobic001G123600 Sobic002G399900--Sobic001G123600 Sobic001G507200 Sobic001G507200 Sobic002G399900--Sobic001G507200 Sobic001G343000--Sobic007G146600 Sobic003G393200 Sobic003G393200 Sobic001G343000--Sobic003G393200 Sobic007G048700 Sobic007G048700 Sobic001G343000--Sobic007G048700 Sobic001G343000--Sobic002G182000 Sobic007G030100 Sobic007G030100 Sobic001G343000--Sobic007G030100 Sobic010G028400 Sobic010G028400 Sobic001G343000--Sobic010G028400 Sobic002G070300 Sobic002G070300 Sobic001G343000--Sobic002G070300 Sobic008G132200 Sobic008G132200 Sobic001G343000--Sobic008G132200 Sobic001G012900 Sobic001G012900 Sobic001G343000--Sobic001G012900 Sobic010G086300 Sobic010G086300 Sobic001G203600--Sobic010G086300 Sobic001G117900 Sobic001G117900 Sobic001G203600--Sobic001G117900 Sobic007G204000 Sobic007G204000 Sobic001G203600--Sobic007G204000 Sobic001G052100 Sobic001G052100 Sobic001G203600--Sobic001G052100 Sobic001G203600--Sobic008G072500 Sobic007G226800 Sobic007G226800 Sobic001G203600--Sobic007G226800 Sobic001G203600--Sobic002G182000 Sobic006G220400 Sobic006G220400 Sobic001G203600--Sobic006G220400 Sobic001G203600--Sobic009G063800 Sobic007G148400 Sobic007G148400 Sobic007G146600--Sobic007G148400 Sobic007G146600--Sobic001G343000 Sobic006G222500 Sobic006G222500 Sobic007G146600--Sobic006G222500 Sobic007G146600--Sobic009G063800 Sobic007G146600--Sobic002G182000 Sobic003G150900 Sobic003G150900 Sobic007G146600--Sobic003G150900 Sobic007G146600--Sobic003G393200 Sobic005G114800 Sobic005G114800 Sobic007G146600--Sobic005G114800 Sobic007G146600--Sobic010G250000 Sobic005G114500 Sobic005G114500 Sobic003G130900--Sobic005G114500 Sobic001G455000 Sobic001G455000 Sobic003G130900--Sobic001G455000 Sobic003G005900 Sobic003G005900 Sobic003G130900--Sobic003G005900 Sobic001G445500 Sobic001G445500 Sobic003G130900--Sobic001G445500 Sobic004G151200 Sobic004G151200 Sobic003G130900--Sobic004G151200 Sobic003G130900--Sobic006G265600 Sobic003G130900--Sobic001G012900 Sobic003G130900--Sobic002G182000 Sobic005G059500 Sobic005G059500 Sobic003G130900--Sobic005G059500 Sobic001G051400 Sobic001G051400 Sobic002G066800--Sobic001G051400 Sobic005G087300 Sobic005G087300 Sobic002G066800--Sobic005G087300 Sobic002G078100 Sobic002G078100 Sobic002G066800--Sobic002G078100 Sobic002G066800--Sobic003G393200 Sobic010G038900 Sobic010G038900 Sobic002G066800--Sobic010G038900 Sobic002G066800--Sobic010G018900 Sobic003G010900 Sobic003G010900 Sobic002G066800--Sobic003G010900 Sobic006G191200 Sobic006G191200 Sobic002G066800--Sobic006G191200 Sobic003G023200 Sobic003G023200 Sobic002G066800--Sobic003G023200 Sobic001G467100 Sobic001G467100 Sobic010G172400--Sobic001G467100 Sobic010G172400--Sobic003G222700 Sobic010G172400--Sobic002G399900 Sobic006G091000 Sobic006G091000 Sobic010G172400--Sobic006G091000 Sobic010G172400--Sobic002G182000 Sobic010G172400--Sobic005G114500 Sobic010G172400--Sobic001G474400 Sobic001G097900 Sobic001G097900 Sobic010G172400--Sobic001G097900 Sobic010G172400--Sobic001G012900 Sobic009G122500 Sobic009G122500 Sobic003G113300--Sobic009G122500 Sobic002G296400 Sobic002G296400 Sobic003G113300--Sobic002G296400 Sobic002G014800 Sobic002G014800 Sobic003G113300--Sobic002G014800 Sobic003G113300--Sobic001G474400 Sobic001G030000 Sobic001G030000 Sobic003G113300--Sobic001G030000 Sobic003G113300--Sobic005G114500 Sobic003G113300--Sobic007G030100 Sobic003G113300--Sobic003G393200 Sobic003G113300--Sobic001G051400
Octagon: transcription factors


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