Gene annotation
Transcriptome id Sobic.001G203600.1
Synonym Sb01g017970
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5WWG1
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF845
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G21705 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g40750.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017490
Brachypodium KQJ97322
Barley -
Wheat TraesCS1B02G188100 , TraesCS1A02G168800 , TraesCS1D02G166800
Populus -


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cDNA sequences
Sobic.001G203600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G086300 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
2 Sobic.001G117900 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
3 Sobic.007G204000 methyl-binding domain protein MBD, putative, expressed -
4 Sobic.001G052100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
5 Sobic.008G072500 SAM-dependent methyltransferase, putative, expressed K18162: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5
6 Sobic.007G226800 -(PubMedID : 26976818)@dicarboxylate transporter 5(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
7 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
8 Sobic.006G220400 exonuclease, putative, expressed -
9 Sobic.009G063800 ATP10 protein, expressed K18192: mitochondrial ATPase complex subunit ATP10
10 Sobic.003G113400 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
11 Sobic.001G385000 nucleoside-triphosphatase, putative, expressed K14641: apyrase
12 Sobic.003G004800 ATP binding protein, putative, expressed -
13 Sobic.001G268300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@queuine tRNA-ribosyltransferase, putative, expressed K15407: queuine tRNA-ribosyltransferase subunit QTRTD1
14 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
15 Sobic.003G204100 expressed protein -
16 Sobic.007G140100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
17 Sobic.002G167100 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
18 Sobic.007G086600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
19 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.002G392400 expressed protein -


Gene co-expression network
sample Sobic001G203600 Sobic001G203600 Sobic010G086300 Sobic010G086300 Sobic001G203600--Sobic010G086300 Sobic001G117900 Sobic001G117900 Sobic001G203600--Sobic001G117900 Sobic007G204000 Sobic007G204000 Sobic001G203600--Sobic007G204000 Sobic001G052100 Sobic001G052100 Sobic001G203600--Sobic001G052100 Sobic008G072500 Sobic008G072500 Sobic001G203600--Sobic008G072500 Sobic007G226800 Sobic007G226800 Sobic001G203600--Sobic007G226800 Sobic002G182000 Sobic002G182000 Sobic001G203600--Sobic002G182000 Sobic006G220400 Sobic006G220400 Sobic001G203600--Sobic006G220400 Sobic009G063800 Sobic009G063800 Sobic001G203600--Sobic009G063800 Sobic001G385000 Sobic001G385000 Sobic010G086300--Sobic001G385000 Sobic006G232800 Sobic006G232800 Sobic010G086300--Sobic006G232800 Sobic003G394500 Sobic003G394500 Sobic010G086300--Sobic003G394500 Sobic001G149000 Sobic001G149000 Sobic010G086300--Sobic001G149000 Sobic008G022400 Sobic008G022400 Sobic010G086300--Sobic008G022400 Sobic009G025700 Sobic009G025700 Sobic010G086300--Sobic009G025700 Sobic002G362500 Sobic002G362500 Sobic010G086300--Sobic002G362500 Sobic006G191000 Sobic006G191000 Sobic010G086300--Sobic006G191000 Sobic009G046900 Sobic009G046900 Sobic010G086300--Sobic009G046900 Sobic002G308000 Sobic002G308000 Sobic001G117900--Sobic002G308000 Sobic001G433600 Sobic001G433600 Sobic001G117900--Sobic001G433600 Sobic002G392400 Sobic002G392400 Sobic001G117900--Sobic002G392400 Sobic007G086600 Sobic007G086600 Sobic001G117900--Sobic007G086600 Sobic005G060100 Sobic005G060100 Sobic001G117900--Sobic005G060100 Sobic007G105700 Sobic007G105700 Sobic001G117900--Sobic007G105700 Sobic002G348400 Sobic002G348400 Sobic001G117900--Sobic002G348400 Sobic001G117900--Sobic009G025700 Sobic003G004800 Sobic003G004800 Sobic001G117900--Sobic003G004800 Sobic007G204000--Sobic003G394500 Sobic007G118500 Sobic007G118500 Sobic007G204000--Sobic007G118500 Sobic007G204000--Sobic001G203600 Sobic007G204000--Sobic010G086300 Sobic003G409900 Sobic003G409900 Sobic007G204000--Sobic003G409900 Sobic001G043200 Sobic001G043200 Sobic007G204000--Sobic001G043200 Sobic007G204000--Sobic006G191000 Sobic007G204000--Sobic006G220400 Sobic007G204000--Sobic001G385000 Sobic005G123400 Sobic005G123400 Sobic001G052100--Sobic005G123400 Sobic008G039000 Sobic008G039000 Sobic001G052100--Sobic008G039000 Sobic001G052100--Sobic001G203600 Sobic010G112600 Sobic010G112600 Sobic001G052100--Sobic010G112600 Sobic006G237500 Sobic006G237500 Sobic001G052100--Sobic006G237500 Sobic006G262800 Sobic006G262800 Sobic001G052100--Sobic006G262800 Sobic009G227100 Sobic009G227100 Sobic001G052100--Sobic009G227100 Sobic001G478900 Sobic001G478900 Sobic001G052100--Sobic001G478900 Sobic008G095900 Sobic008G095900 Sobic001G052100--Sobic008G095900 Sobic003G049200 Sobic003G049200 Sobic008G072500--Sobic003G049200 Sobic003G260600 Sobic003G260600 Sobic008G072500--Sobic003G260600 Sobic010G133400 Sobic010G133400 Sobic008G072500--Sobic010G133400 Sobic001G378800 Sobic001G378800 Sobic008G072500--Sobic001G378800 Sobic002G193500 Sobic002G193500 Sobic008G072500--Sobic002G193500 Sobic008G072500--Sobic006G232800 Sobic003G048600 Sobic003G048600 Sobic008G072500--Sobic003G048600 Sobic008G072500--Sobic007G118500 Sobic008G072500--Sobic010G086300 Sobic007G226800--Sobic001G203600 Sobic007G226800--Sobic010G086300 Sobic007G226800--Sobic008G072500 Sobic007G226800--Sobic009G025700 Sobic004G025700 Sobic004G025700 Sobic007G226800--Sobic004G025700 Sobic007G226800--Sobic003G049200 Sobic001G011000 Sobic001G011000 Sobic007G226800--Sobic001G011000 Sobic007G226800--Sobic010G133400 Sobic007G226800--Sobic001G378800 Sobic002G182000--Sobic009G063800 Sobic002G399900 Sobic002G399900 Sobic002G182000--Sobic002G399900 Sobic001G343000 Sobic001G343000 Sobic002G182000--Sobic001G343000 Sobic002G182000--Sobic001G203600 Sobic007G146600 Sobic007G146600 Sobic002G182000--Sobic007G146600 Sobic003G130900 Sobic003G130900 Sobic002G182000--Sobic003G130900 Sobic002G066800 Sobic002G066800 Sobic002G182000--Sobic002G066800 Sobic010G172400 Sobic010G172400 Sobic002G182000--Sobic010G172400 Sobic003G113300 Sobic003G113300 Sobic002G182000--Sobic003G113300 Sobic006G220400--Sobic001G043200 Sobic006G220400--Sobic005G123400 Sobic006G220400--Sobic009G227100 Sobic006G012300 Sobic006G012300 Sobic006G220400--Sobic006G012300 Sobic006G220400--Sobic001G203600 Sobic006G103700 Sobic006G103700 Sobic006G220400--Sobic006G103700 Sobic006G220400--Sobic007G204000 Sobic004G194100 Sobic004G194100 Sobic006G220400--Sobic004G194100 Sobic004G334200 Sobic004G334200 Sobic006G220400--Sobic004G334200 Sobic009G063800--Sobic002G182000 Sobic010G250000 Sobic010G250000 Sobic009G063800--Sobic010G250000 Sobic009G063800--Sobic007G146600 Sobic001G309200 Sobic001G309200 Sobic009G063800--Sobic001G309200 Sobic002G322400 Sobic002G322400 Sobic009G063800--Sobic002G322400 Sobic010G018900 Sobic010G018900 Sobic009G063800--Sobic010G018900 Sobic009G063800--Sobic001G203600 Sobic009G063800--Sobic002G348400 Sobic009G063800--Sobic008G072500
Octagon: transcription factors


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