Gene annotation
Transcriptome id Sobic.001G117900.2,Sobic.001G117900.4,Sobic.001G117900.1,Sobic.001G117900.3
Synonym GRIK2, ATSNAK1, Sb01g010400
Functional annotation CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt A0A1B6QIJ9 , A0A1Z5S5B9 , A0A1B6QIJ1
Pfam PF00069 PF14531 PF07714
Panther DB PTHR24347 PTHR24347:SF1
NCBI CDD KOG0583; Serine/threonine protein kinase
KEGG Orthology K07359; calcium/calmodulin-dependent protein kinase kinase 2
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity GO:0006468protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G60550 : geminivirus rep interacting kinase 2
RAP-DB (Rice) LOC_Os03g50330.1 : CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a056603 , Zm00025a010425
Brachypodium KQK13614
Barley HORVU1Hr1G094990.24 , HORVU1Hr1G094990.23 , HORVU1Hr1G094990.21 , HORVU1Hr1G094990.20 , HORVU1Hr1G094990.16 , HORVU1Hr1G094990.17 , HORVU1Hr1G094990.12 , HORVU1Hr1G094990.13 , HORVU1Hr1G094990.18 , HORVU4Hr1G007440.9 , HORVU4Hr1G007440.6 , HORVU4Hr1G007440.5 , HORVU4Hr1G007440.3 , HORVU4Hr1G007440.1 , HORVU1Hr1G094990.11 , HORVU4Hr1G007440.17 , HORVU4Hr1G007440.15 , HORVU4Hr1G007440.14 , HORVU4Hr1G007440.12 , HORVU4Hr1G007440.18 , HORVU1Hr1G094990.9 , HORVU4Hr1G007440.21 , HORVU1Hr1G094990.5 , HORVU1Hr1G094990.1 , HORVU1Hr1G094990.2 , HORVU1Hr1G094990.3
Wheat TraesCS4A02G268200 , TraesCS1D02G451100 , TraesCS4B02G046100 , TraesCS4D02G045900 , TraesCS1A02G443100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
2 Sobic.001G433600 - -
3 Sobic.002G392400 expressed protein -
4 Sobic.007G086600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
5 Sobic.005G060100 growth regulator related protein, putative, expressed -
6 Sobic.007G105700 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
7 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
8 Sobic.009G025700 cycloeucalenol cycloisomerase, putative, expressed K08246: cycloeucalenol cycloisomerase
9 Sobic.003G004800 ATP binding protein, putative, expressed -
10 Sobic.004G298600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
11 Sobic.001G380700 bZIP transcription factor family protein, putative, expressed -
12 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
13 Sobic.001G385300 auxin-independent growth promoter protein, putative, expressed -
14 Sobic.002G193500 malonyl-CoA decarboxylase, mitochondrial precursor, putative, expressed K01578: malonyl-CoA decarboxylase
15 Sobic.001G131900 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
16 Sobic.007G189100 SFC, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
17 Sobic.004G026600 - -
18 Sobic.010G153400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
19 Sobic.002G239400 OsFBX338 - F-box domain containing protein, expressed -
20 Sobic.006G232800 expressed protein K17785: IMMT, FCJ1, mitofilin


Gene co-expression network
sample Sobic001G117900 Sobic001G117900 Sobic002G308000 Sobic002G308000 Sobic001G117900--Sobic002G308000 Sobic001G433600 Sobic001G433600 Sobic001G117900--Sobic001G433600 Sobic002G392400 Sobic002G392400 Sobic001G117900--Sobic002G392400 Sobic007G086600 Sobic007G086600 Sobic001G117900--Sobic007G086600 Sobic005G060100 Sobic005G060100 Sobic001G117900--Sobic005G060100 Sobic007G105700 Sobic007G105700 Sobic001G117900--Sobic007G105700 Sobic002G348400 Sobic002G348400 Sobic001G117900--Sobic002G348400 Sobic009G025700 Sobic009G025700 Sobic001G117900--Sobic009G025700 Sobic003G004800 Sobic003G004800 Sobic001G117900--Sobic003G004800 Sobic002G308000--Sobic002G392400 Sobic002G308000--Sobic007G105700 Sobic002G308000--Sobic001G117900 Sobic002G308000--Sobic001G433600 Sobic003G293400 Sobic003G293400 Sobic002G308000--Sobic003G293400 Sobic010G253200 Sobic010G253200 Sobic002G308000--Sobic010G253200 Sobic001G131900 Sobic001G131900 Sobic002G308000--Sobic001G131900 Sobic007G111300 Sobic007G111300 Sobic002G308000--Sobic007G111300 Sobic002G192900 Sobic002G192900 Sobic002G308000--Sobic002G192900 Sobic001G433600--Sobic001G117900 Sobic001G433600--Sobic002G308000 Sobic001G433600--Sobic005G060100 Sobic001G433600--Sobic007G105700 Sobic009G054400 Sobic009G054400 Sobic001G433600--Sobic009G054400 Sobic004G298600 Sobic004G298600 Sobic001G433600--Sobic004G298600 Sobic007G189100 Sobic007G189100 Sobic001G433600--Sobic007G189100 Sobic001G433600--Sobic001G131900 Sobic001G433600--Sobic007G086600 Sobic002G392400--Sobic007G105700 Sobic002G392400--Sobic002G308000 Sobic002G392400--Sobic001G117900 Sobic002G392400--Sobic002G348400 Sobic002G313100 Sobic002G313100 Sobic002G392400--Sobic002G313100 Sobic002G392400--Sobic003G293400 Sobic002G392400--Sobic001G131900 Sobic006G232800 Sobic006G232800 Sobic002G392400--Sobic006G232800 Sobic010G153400 Sobic010G153400 Sobic002G392400--Sobic010G153400 Sobic007G086600--Sobic003G004800 Sobic007G086600--Sobic001G117900 Sobic005G048600 Sobic005G048600 Sobic007G086600--Sobic005G048600 Sobic007G086600--Sobic003G293400 Sobic003G022000 Sobic003G022000 Sobic007G086600--Sobic003G022000 Sobic007G086600--Sobic002G348400 Sobic007G086600--Sobic001G433600 Sobic002G193500 Sobic002G193500 Sobic007G086600--Sobic002G193500 Sobic009G201000 Sobic009G201000 Sobic007G086600--Sobic009G201000 Sobic005G060100--Sobic007G105700 Sobic007G102300 Sobic007G102300 Sobic005G060100--Sobic007G102300 Sobic001G385300 Sobic001G385300 Sobic005G060100--Sobic001G385300 Sobic003G216600 Sobic003G216600 Sobic005G060100--Sobic003G216600 Sobic005G060100--Sobic001G433600 Sobic005G060100--Sobic004G298600 Sobic005G060100--Sobic001G117900 Sobic003G352900 Sobic003G352900 Sobic005G060100--Sobic003G352900 Sobic005G060100--Sobic001G131900 Sobic007G105700--Sobic002G392400 Sobic007G105700--Sobic002G308000 Sobic007G105700--Sobic005G060100 Sobic007G105700--Sobic001G433600 Sobic007G105700--Sobic001G385300 Sobic001G308500 Sobic001G308500 Sobic007G105700--Sobic001G308500 Sobic007G105700--Sobic004G298600 Sobic008G085950 Sobic008G085950 Sobic007G105700--Sobic008G085950 Sobic007G105700--Sobic001G117900 Sobic002G348400--Sobic010G153400 Sobic002G348400--Sobic002G392400 Sobic002G348400--Sobic007G086600 Sobic002G348400--Sobic001G117900 Sobic001G305900 Sobic001G305900 Sobic002G348400--Sobic001G305900 Sobic001G309200 Sobic001G309200 Sobic002G348400--Sobic001G309200 Sobic001G280500 Sobic001G280500 Sobic002G348400--Sobic001G280500 Sobic002G348400--Sobic003G004800 Sobic001G188000 Sobic001G188000 Sobic002G348400--Sobic001G188000 Sobic009G220700 Sobic009G220700 Sobic009G025700--Sobic009G220700 Sobic002G201700 Sobic002G201700 Sobic009G025700--Sobic002G201700 Sobic002G167100 Sobic002G167100 Sobic009G025700--Sobic002G167100 Sobic002G362500 Sobic002G362500 Sobic009G025700--Sobic002G362500 Sobic006G050100 Sobic006G050100 Sobic009G025700--Sobic006G050100 Sobic009G163100 Sobic009G163100 Sobic009G025700--Sobic009G163100 Sobic004G026600 Sobic004G026600 Sobic009G025700--Sobic004G026600 Sobic002G309100 Sobic002G309100 Sobic009G025700--Sobic002G309100 Sobic008G156600 Sobic008G156600 Sobic009G025700--Sobic008G156600 Sobic003G004800--Sobic007G086600 Sobic006G265800 Sobic006G265800 Sobic003G004800--Sobic006G265800 Sobic003G004800--Sobic001G385300 Sobic001G076600 Sobic001G076600 Sobic003G004800--Sobic001G076600 Sobic003G004800--Sobic003G293400 Sobic003G004800--Sobic010G153400 Sobic003G004800--Sobic001G308500 Sobic003G004800--Sobic001G117900 Sobic003G004800--Sobic005G060100
Octagon: transcription factors


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