Gene annotation
Transcriptome id Sobic.007G086600.1
Synonym Sb07g007490
Functional annotation indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
UniProt C5YJF0
Pfam PF00218
Panther DB PTHR22854 PTHR22854:SF13
NCBI CDD KOG4201; Anthranilate synthase component II
KEGG Orthology K01609; indole-3-glycerol phosphate synthase
Gene Ontology GO:0004425; indole-3-glycerol-phosphate synthase activity


Orthologs (automatic annotation)
TAIR AT2G04400 : Aldolase-type TIM barrel family protein
RAP-DB (Rice) LOC_Os08g23150.1 : indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a054968
Brachypodium PNT62846 , KQJ82078
Barley HORVU7Hr1G114660.15 , HORVU7Hr1G114660.14 , HORVU7Hr1G114660.13 , HORVU7Hr1G114660.12 , HORVU7Hr1G114660.11 , HORVU7Hr1G114660.10 , HORVU7Hr1G114660.9 , HORVU7Hr1G114660.8 , HORVU7Hr1G114660.7 , HORVU7Hr1G114660.6 , HORVU7Hr1G114660.5 , HORVU7Hr1G114660.4 , HORVU7Hr1G114660.3 , HORVU7Hr1G114660.2 , HORVU7Hr1G114660.1
Wheat TraesCS7B02G423900 , TraesCS7A02G512300 , TraesCS7D02G501700
Populus -


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cDNA sequences
Sobic.007G086600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G004800 ATP binding protein, putative, expressed -
2 Sobic.001G117900 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
3 Sobic.005G048600 expressed protein -
4 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
5 Sobic.003G022000 phospho-N-acetylmuramoyl-pentapeptide-transferase, putative, expressed K01000: phospho-N-acetylmuramoyl-pentapeptide-transferase
6 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
7 Sobic.001G433600 - -
8 Sobic.002G193500 malonyl-CoA decarboxylase, mitochondrial precursor, putative, expressed K01578: malonyl-CoA decarboxylase
9 Sobic.009G201000 hydrolase, acting on carbon-nitrogen, putative, expressed -
10 Sobic.001G076600 hydrolase, acting on carbon-nitrogen, putative, expressed -
11 Sobic.002G313100 STE_PAK_Ste20_MST_like.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08838: serine/threonine-protein kinase 24/25/MST4
12 Sobic.003G352900 OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
13 Sobic.001G308500 glycosyltransferase family protein 1, putative, expressed -
14 Sobic.010G255400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
15 Sobic.004G298600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
16 Sobic.004G198300 expressed protein -
17 Sobic.006G050100 expressed protein -
18 Sobic.009G025700 cycloeucalenol cycloisomerase, putative, expressed K08246: cycloeucalenol cycloisomerase
19 Sobic.002G304700 RFT1, putative, expressed K06316: oligosaccharide translocation protein RFT1
20 Sobic.006G232800 expressed protein K17785: IMMT, FCJ1, mitofilin


Gene co-expression network
sample Sobic007G086600 Sobic007G086600 Sobic003G004800 Sobic003G004800 Sobic007G086600--Sobic003G004800 Sobic001G117900 Sobic001G117900 Sobic007G086600--Sobic001G117900 Sobic005G048600 Sobic005G048600 Sobic007G086600--Sobic005G048600 Sobic003G293400 Sobic003G293400 Sobic007G086600--Sobic003G293400 Sobic003G022000 Sobic003G022000 Sobic007G086600--Sobic003G022000 Sobic002G348400 Sobic002G348400 Sobic007G086600--Sobic002G348400 Sobic001G433600 Sobic001G433600 Sobic007G086600--Sobic001G433600 Sobic002G193500 Sobic002G193500 Sobic007G086600--Sobic002G193500 Sobic009G201000 Sobic009G201000 Sobic007G086600--Sobic009G201000 Sobic003G004800--Sobic007G086600 Sobic006G265800 Sobic006G265800 Sobic003G004800--Sobic006G265800 Sobic001G385300 Sobic001G385300 Sobic003G004800--Sobic001G385300 Sobic001G076600 Sobic001G076600 Sobic003G004800--Sobic001G076600 Sobic003G004800--Sobic003G293400 Sobic010G153400 Sobic010G153400 Sobic003G004800--Sobic010G153400 Sobic001G308500 Sobic001G308500 Sobic003G004800--Sobic001G308500 Sobic003G004800--Sobic001G117900 Sobic005G060100 Sobic005G060100 Sobic003G004800--Sobic005G060100 Sobic002G308000 Sobic002G308000 Sobic001G117900--Sobic002G308000 Sobic001G117900--Sobic001G433600 Sobic002G392400 Sobic002G392400 Sobic001G117900--Sobic002G392400 Sobic001G117900--Sobic007G086600 Sobic001G117900--Sobic005G060100 Sobic007G105700 Sobic007G105700 Sobic001G117900--Sobic007G105700 Sobic001G117900--Sobic002G348400 Sobic009G025700 Sobic009G025700 Sobic001G117900--Sobic009G025700 Sobic001G117900--Sobic003G004800 Sobic005G048600--Sobic007G086600 Sobic003G352900 Sobic003G352900 Sobic005G048600--Sobic003G352900 Sobic001G073700 Sobic001G073700 Sobic005G048600--Sobic001G073700 Sobic005G048600--Sobic003G293400 Sobic005G048600--Sobic001G076600 Sobic003G217800 Sobic003G217800 Sobic005G048600--Sobic003G217800 Sobic007G144100 Sobic007G144100 Sobic005G048600--Sobic007G144100 Sobic005G048600--Sobic005G060100 Sobic005G045800 Sobic005G045800 Sobic005G048600--Sobic005G045800 Sobic001G131900 Sobic001G131900 Sobic003G293400--Sobic001G131900 Sobic003G293400--Sobic003G352900 Sobic004G198300 Sobic004G198300 Sobic003G293400--Sobic004G198300 Sobic003G293400--Sobic001G076600 Sobic002G420100 Sobic002G420100 Sobic003G293400--Sobic002G420100 Sobic004G038400 Sobic004G038400 Sobic003G293400--Sobic004G038400 Sobic004G026600 Sobic004G026600 Sobic003G293400--Sobic004G026600 Sobic004G298600 Sobic004G298600 Sobic003G293400--Sobic004G298600 Sobic003G293400--Sobic007G144100 Sobic002G167100 Sobic002G167100 Sobic003G022000--Sobic002G167100 Sobic003G022000--Sobic007G086600 Sobic002G201700 Sobic002G201700 Sobic003G022000--Sobic002G201700 Sobic007G192500 Sobic007G192500 Sobic003G022000--Sobic007G192500 Sobic002G309100 Sobic002G309100 Sobic003G022000--Sobic002G309100 Sobic001G499500 Sobic001G499500 Sobic003G022000--Sobic001G499500 Sobic001G385000 Sobic001G385000 Sobic003G022000--Sobic001G385000 Sobic003G022000--Sobic001G117900 Sobic003G022000--Sobic009G025700 Sobic002G348400--Sobic010G153400 Sobic002G348400--Sobic002G392400 Sobic002G348400--Sobic007G086600 Sobic002G348400--Sobic001G117900 Sobic001G305900 Sobic001G305900 Sobic002G348400--Sobic001G305900 Sobic001G309200 Sobic001G309200 Sobic002G348400--Sobic001G309200 Sobic001G280500 Sobic001G280500 Sobic002G348400--Sobic001G280500 Sobic002G348400--Sobic003G004800 Sobic001G188000 Sobic001G188000 Sobic002G348400--Sobic001G188000 Sobic001G433600--Sobic001G117900 Sobic001G433600--Sobic002G308000 Sobic001G433600--Sobic005G060100 Sobic001G433600--Sobic007G105700 Sobic009G054400 Sobic009G054400 Sobic001G433600--Sobic009G054400 Sobic001G433600--Sobic004G298600 Sobic007G189100 Sobic007G189100 Sobic001G433600--Sobic007G189100 Sobic001G433600--Sobic001G131900 Sobic001G433600--Sobic007G086600 Sobic002G193500--Sobic007G086600 Sobic007G111300 Sobic007G111300 Sobic002G193500--Sobic007G111300 Sobic002G193500--Sobic001G117900 Sobic002G193500--Sobic002G392400 Sobic006G232800 Sobic006G232800 Sobic002G193500--Sobic006G232800 Sobic008G072500 Sobic008G072500 Sobic002G193500--Sobic008G072500 Sobic002G193500--Sobic002G308000 Sobic002G193500--Sobic002G201700 Sobic002G193500--Sobic003G004800 Sobic009G201000--Sobic003G352900 Sobic008G166100 Sobic008G166100 Sobic009G201000--Sobic008G166100 Sobic001G384200 Sobic001G384200 Sobic009G201000--Sobic001G384200 Sobic002G362500 Sobic002G362500 Sobic009G201000--Sobic002G362500 Sobic001G072000 Sobic001G072000 Sobic009G201000--Sobic001G072000 Sobic009G201000--Sobic006G265800 Sobic001G322400 Sobic001G322400 Sobic009G201000--Sobic001G322400 Sobic007G039200 Sobic007G039200 Sobic009G201000--Sobic007G039200 Sobic006G156400 Sobic006G156400 Sobic009G201000--Sobic006G156400
Octagon: transcription factors


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