Gene annotation
Transcriptome id Sobic.006G050100.1
Synonym Sb06g013470, XRI, XRI1
Functional annotation expressed protein
UniProt C5YEQ4
Pfam -
Panther DB PTHR33385 PTHR33385:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G48720 : x-ray induced transcript 1
RAP-DB (Rice) LOC_Os04g30790.1 : expressed protein
MaizeGDB (Corn) Zm00025a055841 , Zm00025a011840
Brachypodium PNT60868 , PNT60869 , KQJ82196 , KQJ82197 , KQJ82194 , KQJ82195
Barley HORVU2Hr1G068380.1 , HORVU2Hr1G068380.2 , HORVU2Hr1G068380.5 , HORVU2Hr1G068380.7 , HORVU2Hr1G068380.6 , HORVU2Hr1G068380.9 , HORVU2Hr1G068380.8 , HORVU2Hr1G068380.15 , HORVU2Hr1G068380.11 , HORVU2Hr1G068380.13 , HORVU2Hr1G068380.12
Wheat TraesCS2B02G296800 , TraesCS2B02G296800 , TraesCS2A02G279300 , TraesCS2D02G278300 , TraesCS2D02G278300 , TraesCS2D02G278300 , TraesCS4D02G274700 , TraesCS4A02G030100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G073700 tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
2 Sobic.002G362500 expressed protein -
3 Sobic.001G322400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
4 Sobic.008G141100 formin, putative, expressed -
5 Sobic.006G156400 double-stranded RNA binding motif containing protein, expressed K18998: RNA polymerase II C-terminal domain phosphatase-like 1/2
6 Sobic.009G025700 cycloeucalenol cycloisomerase, putative, expressed K08246: cycloeucalenol cycloisomerase
7 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
8 Sobic.009G098700 basic helix-loop-helix domain containing protein, expressed -
9 Sobic.010G073900 expressed protein -
10 Sobic.001G485700 DAG protein, chloroplast precursor, putative, expressed -
11 Sobic.010G062900 expressed protein -
12 Sobic.001G387300 exostosin family domain containing protein, expressed -
13 Sobic.009G201000 hydrolase, acting on carbon-nitrogen, putative, expressed -
14 Sobic.003G013700 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
15 Sobic.004G038500 cyclin-related protein, putative, expressed -
16 Sobic.001G183666 - -
17 Sobic.003G407700 dnaJ domain containing protein, expressed -
18 Sobic.003G009000 harpin-induced protein, putative, expressed -
19 Sobic.006G239500 plant protein of unknown function domain containing protein, expressed -
20 Sobic.007G086600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase


Gene co-expression network
sample Sobic006G050100 Sobic006G050100 Sobic001G073700 Sobic001G073700 Sobic006G050100--Sobic001G073700 Sobic002G362500 Sobic002G362500 Sobic006G050100--Sobic002G362500 Sobic001G322400 Sobic001G322400 Sobic006G050100--Sobic001G322400 Sobic008G141100 Sobic008G141100 Sobic006G050100--Sobic008G141100 Sobic006G156400 Sobic006G156400 Sobic006G050100--Sobic006G156400 Sobic009G025700 Sobic009G025700 Sobic006G050100--Sobic009G025700 Sobic001G072000 Sobic001G072000 Sobic006G050100--Sobic001G072000 Sobic009G098700 Sobic009G098700 Sobic006G050100--Sobic009G098700 Sobic010G073900 Sobic010G073900 Sobic006G050100--Sobic010G073900 Sobic009G201000 Sobic009G201000 Sobic001G073700--Sobic009G201000 Sobic001G073700--Sobic002G362500 Sobic001G073700--Sobic006G156400 Sobic001G073700--Sobic001G322400 Sobic001G073700--Sobic006G050100 Sobic003G352900 Sobic003G352900 Sobic001G073700--Sobic003G352900 Sobic008G166100 Sobic008G166100 Sobic001G073700--Sobic008G166100 Sobic001G073700--Sobic001G072000 Sobic001G073700--Sobic008G141100 Sobic002G362500--Sobic001G322400 Sobic002G362500--Sobic001G072000 Sobic002G362500--Sobic009G201000 Sobic002G362500--Sobic008G166100 Sobic007G039200 Sobic007G039200 Sobic002G362500--Sobic007G039200 Sobic009G163100 Sobic009G163100 Sobic002G362500--Sobic009G163100 Sobic004G113600 Sobic004G113600 Sobic002G362500--Sobic004G113600 Sobic001G387300 Sobic001G387300 Sobic002G362500--Sobic001G387300 Sobic004G074900 Sobic004G074900 Sobic002G362500--Sobic004G074900 Sobic001G322400--Sobic001G072000 Sobic001G322400--Sobic010G073900 Sobic001G432200 Sobic001G432200 Sobic001G322400--Sobic001G432200 Sobic001G322400--Sobic008G166100 Sobic004G279200 Sobic004G279200 Sobic001G322400--Sobic004G279200 Sobic007G048101 Sobic007G048101 Sobic001G322400--Sobic007G048101 Sobic009G202000 Sobic009G202000 Sobic001G322400--Sobic009G202000 Sobic009G238650 Sobic009G238650 Sobic001G322400--Sobic009G238650 Sobic003G407700 Sobic003G407700 Sobic001G322400--Sobic003G407700 Sobic009G106700 Sobic009G106700 Sobic008G141100--Sobic009G106700 Sobic006G239500 Sobic006G239500 Sobic008G141100--Sobic006G239500 Sobic002G199800 Sobic002G199800 Sobic008G141100--Sobic002G199800 Sobic008G141100--Sobic009G238650 Sobic008G141100--Sobic006G156400 Sobic004G349600 Sobic004G349600 Sobic008G141100--Sobic004G349600 Sobic005G120400 Sobic005G120400 Sobic008G141100--Sobic005G120400 Sobic008G141100--Sobic010G073900 Sobic008G141100--Sobic003G407700 Sobic006G156400--Sobic009G201000 Sobic006G156400--Sobic008G141100 Sobic009G178400 Sobic009G178400 Sobic006G156400--Sobic009G178400 Sobic009G121200 Sobic009G121200 Sobic006G156400--Sobic009G121200 Sobic006G156400--Sobic009G202000 Sobic005G048500 Sobic005G048500 Sobic006G156400--Sobic005G048500 Sobic006G156400--Sobic001G387300 Sobic006G156400--Sobic001G073700 Sobic009G113500 Sobic009G113500 Sobic006G156400--Sobic009G113500 Sobic009G220700 Sobic009G220700 Sobic009G025700--Sobic009G220700 Sobic002G201700 Sobic002G201700 Sobic009G025700--Sobic002G201700 Sobic002G167100 Sobic002G167100 Sobic009G025700--Sobic002G167100 Sobic009G025700--Sobic002G362500 Sobic009G025700--Sobic006G050100 Sobic009G025700--Sobic009G163100 Sobic004G026600 Sobic004G026600 Sobic009G025700--Sobic004G026600 Sobic002G309100 Sobic002G309100 Sobic009G025700--Sobic002G309100 Sobic008G156600 Sobic008G156600 Sobic009G025700--Sobic008G156600 Sobic001G072000--Sobic001G322400 Sobic005G050400 Sobic005G050400 Sobic001G072000--Sobic005G050400 Sobic001G112600 Sobic001G112600 Sobic001G072000--Sobic001G112600 Sobic001G072000--Sobic004G279200 Sobic001G072000--Sobic008G156600 Sobic001G072000--Sobic001G432200 Sobic001G072000--Sobic009G163100 Sobic009G242200 Sobic009G242200 Sobic001G072000--Sobic009G242200 Sobic004G038500 Sobic004G038500 Sobic001G072000--Sobic004G038500 Sobic009G098700--Sobic006G239500 Sobic009G098700--Sobic002G199800 Sobic009G098700--Sobic010G073900 Sobic009G098700--Sobic003G407700 Sobic003G009000 Sobic003G009000 Sobic009G098700--Sobic003G009000 Sobic009G098700--Sobic005G120400 Sobic009G098700--Sobic004G349600 Sobic010G128350 Sobic010G128350 Sobic009G098700--Sobic010G128350 Sobic009G098700--Sobic009G238650 Sobic010G073900--Sobic003G407700 Sobic010G073900--Sobic002G199800 Sobic010G073900--Sobic009G238650 Sobic010G073900--Sobic006G239500 Sobic010G073900--Sobic004G349600 Sobic010G073900--Sobic001G322400 Sobic010G073900--Sobic010G128350 Sobic010G073900--Sobic009G098700 Sobic010G073900--Sobic009G121200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.