Gene annotation
Transcriptome id Sobic.008G141100.1
Synonym
Functional annotation formin, putative, expressed
UniProt A0A1B6PDN1
Pfam PF10409 PF02181
Panther DB PTHR23213 PTHR23213:SF218
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G07740 : actin binding
RAP-DB (Rice) LOC_Os04g17130.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a004311 , Zm00025a025383
Brachypodium PNT62460 , PNT62459
Barley HORVU5Hr1G020180.38 , HORVU5Hr1G020180.39 , HORVU5Hr1G020180.34 , HORVU5Hr1G020180.35 , HORVU5Hr1G020180.36 , HORVU5Hr1G020180.37 , HORVU5Hr1G020180.30 , HORVU5Hr1G020180.31 , HORVU5Hr1G020180.32 , HORVU5Hr1G020180.33 , HORVU5Hr1G020180.45 , HORVU5Hr1G020180.44 , HORVU5Hr1G020180.47 , HORVU5Hr1G020180.46 , HORVU5Hr1G020180.41 , HORVU5Hr1G020180.40 , HORVU5Hr1G020180.43 , HORVU5Hr1G020180.42 , HORVU5Hr1G020180.49 , HORVU5Hr1G020180.48 , HORVU5Hr1G020180.62 , HORVU5Hr1G020180.61 , HORVU5Hr1G020180.63 , HORVU5Hr1G020180.5 , HORVU5Hr1G020180.7 , HORVU5Hr1G020180.1 , HORVU5Hr1G020180.2 , HORVU5Hr1G020180.3 , HORVU5Hr1G020180.8 , HORVU5Hr1G020180.9 , HORVU5Hr1G020180.60 , HORVU5Hr1G020180.4 , HORVU5Hr1G020180.6 , HORVU5Hr1G020180.66 , HORVU5Hr1G020180.58 , HORVU5Hr1G020180.59 , HORVU5Hr1G020180.50 , HORVU5Hr1G020180.51 , HORVU5Hr1G020180.56 , HORVU5Hr1G020180.57 , HORVU5Hr1G020180.55 , HORVU5Hr1G020180.65 , HORVU5Hr1G020180.64 , HORVU5Hr1G020180.16 , HORVU5Hr1G020180.17 , HORVU5Hr1G020180.14 , HORVU5Hr1G020180.15 , HORVU5Hr1G020180.12 , HORVU5Hr1G020180.13 , HORVU5Hr1G020180.10 , HORVU5Hr1G020180.11 , HORVU5Hr1G020180.18 , HORVU5Hr1G020180.19 , HORVU5Hr1G020180.29 , HORVU5Hr1G020180.28 , HORVU5Hr1G020180.27 , HORVU5Hr1G020180.26 , HORVU5Hr1G020180.25 , HORVU5Hr1G020180.24 , HORVU5Hr1G020180.23 , HORVU5Hr1G020180.22 , HORVU5Hr1G020180.21 , HORVU5Hr1G020180.20
Wheat TraesCS5D02G089100 , TraesCS5A02G075500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G106700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
2 Sobic.006G239500 plant protein of unknown function domain containing protein, expressed -
3 Sobic.002G199800 - -
4 Sobic.009G238650 - -
5 Sobic.006G156400 double-stranded RNA binding motif containing protein, expressed K18998: RNA polymerase II C-terminal domain phosphatase-like 1/2
6 Sobic.004G349600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
7 Sobic.005G120400 CBS domain-containing protein, putative, expressed -
8 Sobic.010G073900 expressed protein -
9 Sobic.003G407700 dnaJ domain containing protein, expressed -
10 Sobic.009G113500 expressed protein -
11 Sobic.010G128350 - -
12 Sobic.004G303000 DTA2, putative, expressed -
13 Sobic.009G098700 basic helix-loop-helix domain containing protein, expressed -
14 Sobic.007G101600 - -
15 Sobic.009G202000 GATA zinc finger domain containing protein, expressed -
16 Sobic.001G308000 viral A-type inclusion protein repeat containing protein, expressed -
17 Sobic.009G178400 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
18 Sobic.004G074900 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
19 Sobic.002G088600 glucose-1-phosphate adenylyltransferase large subunit, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
20 Sobic.007G048101 - -


Gene co-expression network
sample Sobic008G141100 Sobic008G141100 Sobic009G106700 Sobic009G106700 Sobic008G141100--Sobic009G106700 Sobic006G239500 Sobic006G239500 Sobic008G141100--Sobic006G239500 Sobic002G199800 Sobic002G199800 Sobic008G141100--Sobic002G199800 Sobic009G238650 Sobic009G238650 Sobic008G141100--Sobic009G238650 Sobic006G156400 Sobic006G156400 Sobic008G141100--Sobic006G156400 Sobic004G349600 Sobic004G349600 Sobic008G141100--Sobic004G349600 Sobic005G120400 Sobic005G120400 Sobic008G141100--Sobic005G120400 Sobic010G073900 Sobic010G073900 Sobic008G141100--Sobic010G073900 Sobic003G407700 Sobic003G407700 Sobic008G141100--Sobic003G407700 Sobic003G211800 Sobic003G211800 Sobic009G106700--Sobic003G211800 Sobic006G162500 Sobic006G162500 Sobic009G106700--Sobic006G162500 Sobic009G145000 Sobic009G145000 Sobic009G106700--Sobic009G145000 Sobic004G328200 Sobic004G328200 Sobic009G106700--Sobic004G328200 Sobic002G418300 Sobic002G418300 Sobic009G106700--Sobic002G418300 Sobic009G113500 Sobic009G113500 Sobic009G106700--Sobic009G113500 Sobic004G203150 Sobic004G203150 Sobic009G106700--Sobic004G203150 Sobic002G189500 Sobic002G189500 Sobic009G106700--Sobic002G189500 Sobic005G225500 Sobic005G225500 Sobic009G106700--Sobic005G225500 Sobic006G239500--Sobic002G199800 Sobic006G239500--Sobic009G238650 Sobic006G239500--Sobic004G349600 Sobic006G239500--Sobic010G073900 Sobic006G239500--Sobic003G407700 Sobic010G128350 Sobic010G128350 Sobic006G239500--Sobic010G128350 Sobic006G239500--Sobic005G120400 Sobic009G098700 Sobic009G098700 Sobic006G239500--Sobic009G098700 Sobic007G048101 Sobic007G048101 Sobic006G239500--Sobic007G048101 Sobic002G199800--Sobic006G239500 Sobic002G199800--Sobic004G349600 Sobic002G199800--Sobic003G407700 Sobic002G199800--Sobic009G238650 Sobic002G199800--Sobic010G073900 Sobic002G199800--Sobic005G120400 Sobic002G199800--Sobic009G098700 Sobic002G199800--Sobic010G128350 Sobic001G165901 Sobic001G165901 Sobic002G199800--Sobic001G165901 Sobic009G238650--Sobic006G239500 Sobic009G238650--Sobic004G349600 Sobic009G238650--Sobic002G199800 Sobic009G238650--Sobic010G073900 Sobic002G088600 Sobic002G088600 Sobic009G238650--Sobic002G088600 Sobic009G238650--Sobic010G128350 Sobic009G238650--Sobic005G120400 Sobic009G238650--Sobic003G407700 Sobic009G238650--Sobic007G048101 Sobic009G201000 Sobic009G201000 Sobic006G156400--Sobic009G201000 Sobic006G156400--Sobic008G141100 Sobic009G178400 Sobic009G178400 Sobic006G156400--Sobic009G178400 Sobic009G121200 Sobic009G121200 Sobic006G156400--Sobic009G121200 Sobic009G202000 Sobic009G202000 Sobic006G156400--Sobic009G202000 Sobic005G048500 Sobic005G048500 Sobic006G156400--Sobic005G048500 Sobic001G387300 Sobic001G387300 Sobic006G156400--Sobic001G387300 Sobic001G073700 Sobic001G073700 Sobic006G156400--Sobic001G073700 Sobic006G156400--Sobic009G113500 Sobic004G349600--Sobic002G199800 Sobic004G349600--Sobic009G238650 Sobic004G349600--Sobic006G239500 Sobic004G349600--Sobic005G120400 Sobic004G349600--Sobic003G407700 Sobic004G349600--Sobic010G073900 Sobic004G349600--Sobic010G128350 Sobic004G349600--Sobic002G088600 Sobic010G177500 Sobic010G177500 Sobic004G349600--Sobic010G177500 Sobic005G120400--Sobic004G349600 Sobic001G308000 Sobic001G308000 Sobic005G120400--Sobic001G308000 Sobic005G120400--Sobic009G238650 Sobic005G120400--Sobic010G177500 Sobic005G120400--Sobic002G199800 Sobic005G120400--Sobic006G239500 Sobic003G191350 Sobic003G191350 Sobic005G120400--Sobic003G191350 Sobic005G092100 Sobic005G092100 Sobic005G120400--Sobic005G092100 Sobic005G120400--Sobic001G165901 Sobic010G073900--Sobic003G407700 Sobic010G073900--Sobic002G199800 Sobic010G073900--Sobic009G238650 Sobic010G073900--Sobic006G239500 Sobic010G073900--Sobic004G349600 Sobic001G322400 Sobic001G322400 Sobic010G073900--Sobic001G322400 Sobic010G073900--Sobic010G128350 Sobic010G073900--Sobic009G098700 Sobic010G073900--Sobic009G121200 Sobic003G407700--Sobic010G073900 Sobic003G407700--Sobic002G199800 Sobic003G407700--Sobic004G349600 Sobic003G407700--Sobic009G238650 Sobic003G407700--Sobic006G239500 Sobic003G407700--Sobic009G121200 Sobic003G407700--Sobic009G098700 Sobic003G407700--Sobic005G120400 Sobic003G407700--Sobic001G165901
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.