Gene annotation
Transcriptome id Sobic.009G106700.1
Synonym Sb09g017210
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
MATE efflux family protein, putative, expressed
UniProt A0A1Z5R210
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF178
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT5G52450 : MATE efflux family protein
RAP-DB (Rice) LOC_Os10g20470.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a043409 , Zm00025a006950
Brachypodium PNT65259 , KQK04934 , KQK04933 , KQJ91725 , PNT65260
Barley HORVU3Hr1G021970.1 , HORVU3Hr1G021970.2 , HORVU3Hr1G021970.3 , HORVU3Hr1G021970.4 , HORVU3Hr1G021970.5 , HORVU3Hr1G021970.6 , HORVU3Hr1G021970.7 , HORVU3Hr1G021970.8 , HORVU3Hr1G021970.9 , HORVU3Hr1G021970.18 , HORVU3Hr1G021970.19 , HORVU3Hr1G021970.12 , HORVU3Hr1G021970.13 , HORVU3Hr1G021970.11 , HORVU3Hr1G021970.16 , HORVU3Hr1G021970.17 , HORVU3Hr1G021970.14 , HORVU3Hr1G021970.15 , HORVU3Hr1G021970.22 , HORVU3Hr1G021970.21 , HORVU3Hr1G021970.20 , HORVU7Hr1G047080.18 , HORVU7Hr1G047080.19 , HORVU7Hr1G047080.4 , HORVU7Hr1G047080.6 , HORVU7Hr1G047080.7 , HORVU7Hr1G047080.12 , HORVU7Hr1G047080.10 , HORVU7Hr1G047080.11 , HORVU7Hr1G047080.17 , HORVU7Hr1G047080.2 , HORVU7Hr1G047080.3 , HORVU7Hr1G047080.8 , HORVU7Hr1G047080.23 , HORVU7Hr1G047080.22 , HORVU7Hr1G047080.26 , HORVU7Hr1G047080.25 , HORVU7Hr1G047080.24 , HORVU7Hr1G108070.3 , HORVU7Hr1G108070.2 , HORVU7Hr1G108070.1 , HORVU7Hr1G108070.6 , HORVU7Hr1G108070.5 , HORVU7Hr1G108070.4
Wheat TraesCS7D02G460200 , TraesCS7D02G460200 , TraesCS7D02G460200 , TraesCS7D02G230900 , TraesCS7D02G230900 , TraesCS7D02G230800 , TraesCS7A02G230500 , TraesCS7B02G196300 , TraesCS7A02G473200 , TraesCS7B02G374500 , TraesCS7D02G481500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G211800 expressed protein -
2 Sobic.006G162500 - -
3 Sobic.009G145000 early-responsive to dehydration protein-related, putative, expressed -
4 Sobic.004G328200 - -
5 Sobic.002G418300 vacuolar-sorting receptor precursor, putative, expressed -
6 Sobic.009G113500 expressed protein -
7 Sobic.004G203150 - -
8 Sobic.002G189500 expressed protein -
9 Sobic.005G225500 expressed protein -
10 Sobic.004G290600 beige/BEACH domain containing protein, expressed -
11 Sobic.008G159701 - -
12 Sobic.007G109301 - -
13 Sobic.004G190400 expressed protein -
14 Sobic.008G141100 formin, putative, expressed -
15 Sobic.001G029300 anthranilate synthase component I-1, chloroplast precursor, putative, expressed K01657: anthranilate synthase component I
16 Sobic.009G008000 transcription factor Dp, putative, expressed -
17 Sobic.007G094700 - -
18 Sobic.010G242600 OsFBDUF52 - F-box and DUF domain containing protein, expressed -
19 Sobic.001G163666 - -
20 Sobic.007G219601 - -


Gene co-expression network
sample Sobic009G106700 Sobic009G106700 Sobic003G211800 Sobic003G211800 Sobic009G106700--Sobic003G211800 Sobic006G162500 Sobic006G162500 Sobic009G106700--Sobic006G162500 Sobic009G145000 Sobic009G145000 Sobic009G106700--Sobic009G145000 Sobic004G328200 Sobic004G328200 Sobic009G106700--Sobic004G328200 Sobic002G418300 Sobic002G418300 Sobic009G106700--Sobic002G418300 Sobic009G113500 Sobic009G113500 Sobic009G106700--Sobic009G113500 Sobic004G203150 Sobic004G203150 Sobic009G106700--Sobic004G203150 Sobic002G189500 Sobic002G189500 Sobic009G106700--Sobic002G189500 Sobic005G225500 Sobic005G225500 Sobic009G106700--Sobic005G225500 Sobic003G211800--Sobic002G418300 Sobic001G417700 Sobic001G417700 Sobic003G211800--Sobic001G417700 Sobic009G048700 Sobic009G048700 Sobic003G211800--Sobic009G048700 Sobic003G211800--Sobic009G145000 Sobic009G008000 Sobic009G008000 Sobic003G211800--Sobic009G008000 Sobic002G243400 Sobic002G243400 Sobic003G211800--Sobic002G243400 Sobic008G056600 Sobic008G056600 Sobic003G211800--Sobic008G056600 Sobic001G136000 Sobic001G136000 Sobic003G211800--Sobic001G136000 Sobic002G099700 Sobic002G099700 Sobic003G211800--Sobic002G099700 Sobic006G162500--Sobic002G418300 Sobic006G162500--Sobic004G203150 Sobic007G109301 Sobic007G109301 Sobic006G162500--Sobic007G109301 Sobic007G094700 Sobic007G094700 Sobic006G162500--Sobic007G094700 Sobic001G029300 Sobic001G029300 Sobic006G162500--Sobic001G029300 Sobic006G162500--Sobic002G189500 Sobic003G133600 Sobic003G133600 Sobic006G162500--Sobic003G133600 Sobic001G163666 Sobic001G163666 Sobic006G162500--Sobic001G163666 Sobic010G242600 Sobic010G242600 Sobic006G162500--Sobic010G242600 Sobic009G145000--Sobic002G189500 Sobic009G145000--Sobic001G417700 Sobic009G145000--Sobic004G328200 Sobic009G145000--Sobic001G029300 Sobic006G266400 Sobic006G266400 Sobic009G145000--Sobic006G266400 Sobic004G190400 Sobic004G190400 Sobic009G145000--Sobic004G190400 Sobic009G145000--Sobic009G008000 Sobic009G145000--Sobic004G203150 Sobic009G145000--Sobic007G094700 Sobic002G101600 Sobic002G101600 Sobic004G328200--Sobic002G101600 Sobic004G328200--Sobic001G029300 Sobic004G328200--Sobic001G163666 Sobic004G328200--Sobic003G133600 Sobic004G328200--Sobic006G266400 Sobic004G328200--Sobic002G189500 Sobic001G068066 Sobic001G068066 Sobic004G328200--Sobic001G068066 Sobic004G328200--Sobic010G242600 Sobic009G207700 Sobic009G207700 Sobic004G328200--Sobic009G207700 Sobic002G418300--Sobic001G417700 Sobic002G418300--Sobic007G094700 Sobic002G418300--Sobic003G133600 Sobic002G418300--Sobic004G203150 Sobic002G418300--Sobic001G029300 Sobic002G418300--Sobic002G101600 Sobic002G418300--Sobic004G328200 Sobic002G418300--Sobic002G189500 Sobic008G155700 Sobic008G155700 Sobic002G418300--Sobic008G155700 Sobic004G328500 Sobic004G328500 Sobic009G113500--Sobic004G328500 Sobic009G121200 Sobic009G121200 Sobic009G113500--Sobic009G121200 Sobic002G088600 Sobic002G088600 Sobic009G113500--Sobic002G088600 Sobic003G407700 Sobic003G407700 Sobic009G113500--Sobic003G407700 Sobic004G177900 Sobic004G177900 Sobic009G113500--Sobic004G177900 Sobic004G290600 Sobic004G290600 Sobic009G113500--Sobic004G290600 Sobic010G073900 Sobic010G073900 Sobic009G113500--Sobic010G073900 Sobic004G057300 Sobic004G057300 Sobic009G113500--Sobic004G057300 Sobic009G113500--Sobic004G328200 Sobic004G203150--Sobic007G094700 Sobic007G219601 Sobic007G219601 Sobic004G203150--Sobic007G219601 Sobic004G203150--Sobic003G133600 Sobic004G203150--Sobic002G418300 Sobic004G203150--Sobic001G029300 Sobic004G203150--Sobic004G328200 Sobic004G203150--Sobic001G417700 Sobic004G203150--Sobic009G008000 Sobic004G203150--Sobic008G155700 Sobic002G189500--Sobic004G190400 Sobic002G189500--Sobic006G266400 Sobic002G189500--Sobic001G029300 Sobic002G189500--Sobic010G242600 Sobic002G189500--Sobic001G163666 Sobic002G189500--Sobic002G101600 Sobic002G189500--Sobic009G145000 Sobic001G240600 Sobic001G240600 Sobic002G189500--Sobic001G240600 Sobic010G177200 Sobic010G177200 Sobic002G189500--Sobic010G177200 Sobic006G001100 Sobic006G001100 Sobic005G225500--Sobic006G001100 Sobic008G159701 Sobic008G159701 Sobic005G225500--Sobic008G159701 Sobic002G106600 Sobic002G106600 Sobic005G225500--Sobic002G106600 Sobic005G003700 Sobic005G003700 Sobic005G225500--Sobic005G003700 Sobic007G070900 Sobic007G070900 Sobic005G225500--Sobic007G070900 Sobic005G225500--Sobic004G290600 Sobic004G308800 Sobic004G308800 Sobic005G225500--Sobic004G308800 Sobic007G176900 Sobic007G176900 Sobic005G225500--Sobic007G176900 Sobic006G205400 Sobic006G205400 Sobic005G225500--Sobic006G205400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.