Gene annotation
Transcriptome id Sobic.006G156400.1,Sobic.006G156400.3,Sobic.006G156400.2
Synonym Sb06g023330, ATCPL1, FRY2, CPL1
Functional annotation double-stranded RNA binding motif containing protein, expressed
UniProt A0A1Z5RE36 , A0A1B6PM75 , A0A1B6PM64
Pfam PF03031 PF00035
Panther DB PTHR23081 PTHR23081:SF1
NCBI CDD -
KEGG Orthology K18998; RNA polymerase II C-terminal domain phosphatase-like 1/2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G21670 : C-terminal domain phosphatase-like 1
RAP-DB (Rice) LOC_Os04g44710.1 : double-stranded RNA binding motif containing protein, expressed
MaizeGDB (Corn) Zm00025a021002 , Zm00025a032107
Brachypodium KQJ83720 , PNT61531 , PNT61530 , KQJ83719 , KQJ83718 , KQK00494 , PNT69120 , PNT69121
Barley HORVU6Hr1G060230.24 , HORVU6Hr1G060230.25 , HORVU6Hr1G060230.26 , HORVU6Hr1G060230.20 , HORVU6Hr1G060230.21 , HORVU6Hr1G060230.22 , HORVU6Hr1G060230.23 , HORVU2Hr1G091030.19 , HORVU2Hr1G091030.18 , HORVU2Hr1G091030.17 , HORVU2Hr1G091030.16 , HORVU2Hr1G091030.15 , HORVU2Hr1G091030.14 , HORVU2Hr1G091030.13 , HORVU2Hr1G091030.12 , HORVU2Hr1G091030.11 , HORVU2Hr1G091030.10 , HORVU6Hr1G060230.11 , HORVU6Hr1G060230.10 , HORVU6Hr1G060230.13 , HORVU6Hr1G060230.12 , HORVU6Hr1G060230.15 , HORVU6Hr1G060230.14 , HORVU6Hr1G060230.17 , HORVU6Hr1G060230.16 , HORVU6Hr1G060230.19 , HORVU6Hr1G060230.18 , HORVU6Hr1G060230.5 , HORVU6Hr1G060230.4 , HORVU6Hr1G060230.7 , HORVU6Hr1G060230.6 , HORVU6Hr1G060230.1 , HORVU6Hr1G060230.3 , HORVU6Hr1G060230.2 , HORVU6Hr1G060230.9 , HORVU6Hr1G060230.8 , HORVU2Hr1G091030.22 , HORVU2Hr1G091030.23 , HORVU2Hr1G091030.20 , HORVU2Hr1G091030.21 , HORVU2Hr1G091030.7 , HORVU2Hr1G091030.6 , HORVU2Hr1G091030.5 , HORVU2Hr1G091030.4 , HORVU2Hr1G091030.3 , HORVU2Hr1G091030.2 , HORVU2Hr1G091030.1 , HORVU2Hr1G091030.9 , HORVU2Hr1G091030.8
Wheat TraesCS6D02G218000 , TraesCS6D02G218000 , TraesCS6D02G218000 , TraesCS6D02G218000 , TraesCS6D02G218000 , TraesCS2D02G369600 , TraesCS2D02G369600 , TraesCS2D02G369600 , TraesCS2D02G369600 , TraesCS2D02G369600 , TraesCS2D02G369600 , TraesCS2A02G373400 , TraesCS2A02G373400 , TraesCS2A02G373400 , TraesCS2A02G373400 , TraesCS2A02G373400 , TraesCS2A02G373400 , TraesCS2A02G373400 , TraesCS6B02G264000 , TraesCS6B02G264000 , TraesCS6B02G264000 , TraesCS6B02G264000 , TraesCS2B02G390500 , TraesCS2B02G390500 , TraesCS2B02G390500 , TraesCS6A02G235300 , TraesCS6A02G235300 , TraesCS6A02G235300 , TraesCS6A02G235300 , TraesCS6A02G235300 , TraesCS2A02G373400
Populus PNT39468 , PNT39469 , PNT39471 , PNT39470


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G201000 hydrolase, acting on carbon-nitrogen, putative, expressed -
2 Sobic.008G141100 formin, putative, expressed -
3 Sobic.009G178400 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
4 Sobic.009G121200 stromal membrane-associated protein, putative, expressed K12486: stromal membrane-associated protein
5 Sobic.009G202000 GATA zinc finger domain containing protein, expressed -
6 Sobic.005G048500 serine esterase family protein, putative, expressed -
7 Sobic.001G387300 exostosin family domain containing protein, expressed -
8 Sobic.001G073700 tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
9 Sobic.009G113500 expressed protein -
10 Sobic.003G211800 expressed protein -
11 Sobic.003G352900 OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
12 Sobic.001G076600 hydrolase, acting on carbon-nitrogen, putative, expressed -
13 Sobic.006G193400 regulatory protein, putative, expressed -
14 Sobic.001G384200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
15 Sobic.008G159701 - -
16 Sobic.002G304801 - -
17 Sobic.004G290600 beige/BEACH domain containing protein, expressed -
18 Sobic.010G073900 expressed protein -
19 Sobic.009G106700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
20 Sobic.008G166100 glycosyl transferase family 17 protein, putative, expressed K00737: beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase


Gene co-expression network
sample Sobic006G156400 Sobic006G156400 Sobic009G201000 Sobic009G201000 Sobic006G156400--Sobic009G201000 Sobic008G141100 Sobic008G141100 Sobic006G156400--Sobic008G141100 Sobic009G178400 Sobic009G178400 Sobic006G156400--Sobic009G178400 Sobic009G121200 Sobic009G121200 Sobic006G156400--Sobic009G121200 Sobic009G202000 Sobic009G202000 Sobic006G156400--Sobic009G202000 Sobic005G048500 Sobic005G048500 Sobic006G156400--Sobic005G048500 Sobic001G387300 Sobic001G387300 Sobic006G156400--Sobic001G387300 Sobic001G073700 Sobic001G073700 Sobic006G156400--Sobic001G073700 Sobic009G113500 Sobic009G113500 Sobic006G156400--Sobic009G113500 Sobic003G352900 Sobic003G352900 Sobic009G201000--Sobic003G352900 Sobic008G166100 Sobic008G166100 Sobic009G201000--Sobic008G166100 Sobic001G384200 Sobic001G384200 Sobic009G201000--Sobic001G384200 Sobic002G362500 Sobic002G362500 Sobic009G201000--Sobic002G362500 Sobic001G072000 Sobic001G072000 Sobic009G201000--Sobic001G072000 Sobic006G265800 Sobic006G265800 Sobic009G201000--Sobic006G265800 Sobic001G322400 Sobic001G322400 Sobic009G201000--Sobic001G322400 Sobic007G039200 Sobic007G039200 Sobic009G201000--Sobic007G039200 Sobic009G201000--Sobic006G156400 Sobic009G106700 Sobic009G106700 Sobic008G141100--Sobic009G106700 Sobic006G239500 Sobic006G239500 Sobic008G141100--Sobic006G239500 Sobic002G199800 Sobic002G199800 Sobic008G141100--Sobic002G199800 Sobic009G238650 Sobic009G238650 Sobic008G141100--Sobic009G238650 Sobic008G141100--Sobic006G156400 Sobic004G349600 Sobic004G349600 Sobic008G141100--Sobic004G349600 Sobic005G120400 Sobic005G120400 Sobic008G141100--Sobic005G120400 Sobic010G073900 Sobic010G073900 Sobic008G141100--Sobic010G073900 Sobic003G407700 Sobic003G407700 Sobic008G141100--Sobic003G407700 Sobic009G178400--Sobic001G384200 Sobic001G340800 Sobic001G340800 Sobic009G178400--Sobic001G340800 Sobic002G233600 Sobic002G233600 Sobic009G178400--Sobic002G233600 Sobic009G178400--Sobic008G166100 Sobic009G178400--Sobic007G039200 Sobic007G048101 Sobic007G048101 Sobic009G178400--Sobic007G048101 Sobic001G432200 Sobic001G432200 Sobic009G178400--Sobic001G432200 Sobic001G308000 Sobic001G308000 Sobic009G178400--Sobic001G308000 Sobic002G088600 Sobic002G088600 Sobic009G178400--Sobic002G088600 Sobic004G057300 Sobic004G057300 Sobic009G121200--Sobic004G057300 Sobic003G191350 Sobic003G191350 Sobic009G121200--Sobic003G191350 Sobic004G328500 Sobic004G328500 Sobic009G121200--Sobic004G328500 Sobic009G121200--Sobic003G407700 Sobic001G165901 Sobic001G165901 Sobic009G121200--Sobic001G165901 Sobic004G052600 Sobic004G052600 Sobic009G121200--Sobic004G052600 Sobic009G121200--Sobic010G073900 Sobic007G081100 Sobic007G081100 Sobic009G121200--Sobic007G081100 Sobic002G364700 Sobic002G364700 Sobic009G121200--Sobic002G364700 Sobic009G202000--Sobic001G432200 Sobic004G290600 Sobic004G290600 Sobic009G202000--Sobic004G290600 Sobic010G142650 Sobic010G142650 Sobic009G202000--Sobic010G142650 Sobic009G202000--Sobic002G088600 Sobic003G093100 Sobic003G093100 Sobic009G202000--Sobic003G093100 Sobic010G003200 Sobic010G003200 Sobic009G202000--Sobic010G003200 Sobic001G370400 Sobic001G370400 Sobic009G202000--Sobic001G370400 Sobic006G171600 Sobic006G171600 Sobic009G202000--Sobic006G171600 Sobic004G177900 Sobic004G177900 Sobic009G202000--Sobic004G177900 Sobic009G206100 Sobic009G206100 Sobic005G048500--Sobic009G206100 Sobic006G150300 Sobic006G150300 Sobic005G048500--Sobic006G150300 Sobic006G001100 Sobic006G001100 Sobic005G048500--Sobic006G001100 Sobic009G229400 Sobic009G229400 Sobic005G048500--Sobic009G229400 Sobic006G193400 Sobic006G193400 Sobic005G048500--Sobic006G193400 Sobic002G074800 Sobic002G074800 Sobic005G048500--Sobic002G074800 Sobic006G143900 Sobic006G143900 Sobic005G048500--Sobic006G143900 Sobic006G204400 Sobic006G204400 Sobic005G048500--Sobic006G204400 Sobic010G114200 Sobic010G114200 Sobic005G048500--Sobic010G114200 Sobic001G387300--Sobic001G384200 Sobic001G387300--Sobic009G178400 Sobic001G387300--Sobic008G166100 Sobic001G387300--Sobic001G322400 Sobic004G113600 Sobic004G113600 Sobic001G387300--Sobic004G113600 Sobic001G387300--Sobic009G202000 Sobic003G244400 Sobic003G244400 Sobic001G387300--Sobic003G244400 Sobic001G387300--Sobic001G072000 Sobic001G387300--Sobic001G432200 Sobic001G073700--Sobic009G201000 Sobic001G073700--Sobic002G362500 Sobic001G073700--Sobic006G156400 Sobic001G073700--Sobic001G322400 Sobic006G050100 Sobic006G050100 Sobic001G073700--Sobic006G050100 Sobic001G073700--Sobic003G352900 Sobic001G073700--Sobic008G166100 Sobic001G073700--Sobic001G072000 Sobic001G073700--Sobic008G141100 Sobic009G113500--Sobic004G328500 Sobic009G113500--Sobic009G121200 Sobic009G113500--Sobic002G088600 Sobic009G113500--Sobic003G407700 Sobic009G113500--Sobic004G177900 Sobic009G113500--Sobic004G290600 Sobic009G113500--Sobic010G073900 Sobic009G113500--Sobic004G057300 Sobic004G328200 Sobic004G328200 Sobic009G113500--Sobic004G328200
Octagon: transcription factors


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