Gene annotation
Transcriptome id Sobic.003G013700.1
Synonym TUFF, emb2448, VHA-E1, TUF, Sb03g001360
Functional annotation vacuolar ATP synthase subunit E, putative, expressed
UniProt C5XKC8
Pfam PF01991
Panther DB PTHR12317 PTHR12317:SF21
NCBI CDD KOG1664; Vacuolar H+-ATPase V1 sector, subunit E
KEGG Orthology K02150; ATPeV1E, V-type H+-transporting ATPase subunit E
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups


Orthologs (automatic annotation)
TAIR AT4G11150 : vacuolar ATP synthase subunit E1
RAP-DB (Rice) LOC_Os01g12260.1 : vacuolar ATP synthase subunit E, putative, expressed
MaizeGDB (Corn) Zm00025a022870 , Zm00025a001234 , Zm00025a036897
Brachypodium KQK03349
Barley HORVU3Hr1G029880.4 , HORVU3Hr1G029880.5 , HORVU3Hr1G029880.6 , HORVU3Hr1G029880.7 , HORVU3Hr1G029880.1 , HORVU3Hr1G029880.2 , HORVU3Hr1G029880.3 , HORVU3Hr1G029880.8 , HORVU3Hr1G029880.9
Wheat TraesCS7A02G408700 , TraesCS3A02G146600 , TraesCS3A02G146600 , TraesCS3B02G173900 , TraesCS3B02G173900 , TraesCS3D02G155400 , TraesCS3D02G155400
Populus -


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cDNA sequences
Sobic.003G013700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G261800 sugar-responsive gene(PubMedID : 25496467)@pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
2 Sobic.005G050400 syntaxin 6, putative, expressed -
3 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
4 Sobic.008G156600 Leucine Rich Repeat family protein, expressed -
5 Sobic.003G089100 WD domain, G-beta repeat domain containing protein, expressed -
6 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
7 Sobic.001G322400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
8 Sobic.002G172401 - K07904: Ras-related protein Rab-11A
9 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
10 Sobic.005G020600 Mad3/BUB1 homology region 1 domain containing protein, expressed -
11 Sobic.001G303900 CPuORF23 - conserved peptide uORF-containing transcript, expressed K01087: trehalose 6-phosphate phosphatase
12 Sobic.004G038500 cyclin-related protein, putative, expressed -
13 Sobic.004G279200 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
14 Sobic.002G201700 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
15 Sobic.007G014700 Fructokinase-2 (Zm)(PubMedID : 27208977)@kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
16 Sobic.003G284100 expressed protein -
17 Sobic.001G400000 NAD dependent epimerase/dehydratase family protein, putative, expressed K12448: UXE, UDP-arabinose 4-epimerase
18 Sobic.003G293100 GATA zinc finger domain containing protein, expressed -
19 Sobic.009G025700 cycloeucalenol cycloisomerase, putative, expressed K08246: cycloeucalenol cycloisomerase
20 Sobic.004G113600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L


Gene co-expression network
sample Sobic003G013700 Sobic003G013700 Sobic004G261800 Sobic004G261800 Sobic003G013700--Sobic004G261800 Sobic005G050400 Sobic005G050400 Sobic003G013700--Sobic005G050400 Sobic001G072000 Sobic001G072000 Sobic003G013700--Sobic001G072000 Sobic008G156600 Sobic008G156600 Sobic003G013700--Sobic008G156600 Sobic003G089100 Sobic003G089100 Sobic003G013700--Sobic003G089100 Sobic009G163100 Sobic009G163100 Sobic003G013700--Sobic009G163100 Sobic001G322400 Sobic001G322400 Sobic003G013700--Sobic001G322400 Sobic002G172401 Sobic002G172401 Sobic003G013700--Sobic002G172401 Sobic001G112600 Sobic001G112600 Sobic003G013700--Sobic001G112600 Sobic004G261800--Sobic003G013700 Sobic002G186200 Sobic002G186200 Sobic004G261800--Sobic002G186200 Sobic007G014700 Sobic007G014700 Sobic004G261800--Sobic007G014700 Sobic010G253200 Sobic010G253200 Sobic004G261800--Sobic010G253200 Sobic002G420100 Sobic002G420100 Sobic004G261800--Sobic002G420100 Sobic002G201700 Sobic002G201700 Sobic004G261800--Sobic002G201700 Sobic001G303900 Sobic001G303900 Sobic004G261800--Sobic001G303900 Sobic003G423700 Sobic003G423700 Sobic004G261800--Sobic003G423700 Sobic004G261800--Sobic008G156600 Sobic005G050400--Sobic001G112600 Sobic005G050400--Sobic001G072000 Sobic005G050400--Sobic008G156600 Sobic009G242200 Sobic009G242200 Sobic005G050400--Sobic009G242200 Sobic002G170100 Sobic002G170100 Sobic005G050400--Sobic002G170100 Sobic003G441000 Sobic003G441000 Sobic005G050400--Sobic003G441000 Sobic004G007400 Sobic004G007400 Sobic005G050400--Sobic004G007400 Sobic005G144000 Sobic005G144000 Sobic005G050400--Sobic005G144000 Sobic005G050400--Sobic009G163100 Sobic001G072000--Sobic001G322400 Sobic001G072000--Sobic005G050400 Sobic001G072000--Sobic001G112600 Sobic004G279200 Sobic004G279200 Sobic001G072000--Sobic004G279200 Sobic001G072000--Sobic008G156600 Sobic001G432200 Sobic001G432200 Sobic001G072000--Sobic001G432200 Sobic001G072000--Sobic009G163100 Sobic001G072000--Sobic009G242200 Sobic004G038500 Sobic004G038500 Sobic001G072000--Sobic004G038500 Sobic008G156600--Sobic009G163100 Sobic008G156600--Sobic005G050400 Sobic008G156600--Sobic001G072000 Sobic008G156600--Sobic001G112600 Sobic005G020600 Sobic005G020600 Sobic008G156600--Sobic005G020600 Sobic008G171900 Sobic008G171900 Sobic008G156600--Sobic008G171900 Sobic004G241300 Sobic004G241300 Sobic008G156600--Sobic004G241300 Sobic008G156600--Sobic004G007400 Sobic008G156600--Sobic001G322400 Sobic003G201500 Sobic003G201500 Sobic003G089100--Sobic003G201500 Sobic003G089100--Sobic003G013700 Sobic003G260600 Sobic003G260600 Sobic003G089100--Sobic003G260600 Sobic002G255400 Sobic002G255400 Sobic003G089100--Sobic002G255400 Sobic004G113600 Sobic004G113600 Sobic003G089100--Sobic004G113600 Sobic001G400000 Sobic001G400000 Sobic003G089100--Sobic001G400000 Sobic002G420600 Sobic002G420600 Sobic003G089100--Sobic002G420600 Sobic003G089100--Sobic005G050400 Sobic001G356200 Sobic001G356200 Sobic003G089100--Sobic001G356200 Sobic009G163100--Sobic008G156600 Sobic009G163100--Sobic005G020600 Sobic009G163100--Sobic008G171900 Sobic009G163100--Sobic001G072000 Sobic002G299500 Sobic002G299500 Sobic009G163100--Sobic002G299500 Sobic009G163100--Sobic005G050400 Sobic001G435700 Sobic001G435700 Sobic009G163100--Sobic001G435700 Sobic009G163100--Sobic001G112600 Sobic009G163100--Sobic001G322400 Sobic001G322400--Sobic001G072000 Sobic010G073900 Sobic010G073900 Sobic001G322400--Sobic010G073900 Sobic001G322400--Sobic001G432200 Sobic008G166100 Sobic008G166100 Sobic001G322400--Sobic008G166100 Sobic001G322400--Sobic004G279200 Sobic007G048101 Sobic007G048101 Sobic001G322400--Sobic007G048101 Sobic009G202000 Sobic009G202000 Sobic001G322400--Sobic009G202000 Sobic009G238650 Sobic009G238650 Sobic001G322400--Sobic009G238650 Sobic003G407700 Sobic003G407700 Sobic001G322400--Sobic003G407700 Sobic002G172401--Sobic005G020600 Sobic002G172401--Sobic008G156600 Sobic002G172401--Sobic005G050400 Sobic002G172401--Sobic009G163100 Sobic002G172401--Sobic001G072000 Sobic002G172401--Sobic001G112600 Sobic002G172401--Sobic004G113600 Sobic004G062200 Sobic004G062200 Sobic002G172401--Sobic004G062200 Sobic002G172401--Sobic004G279200 Sobic001G112600--Sobic005G050400 Sobic001G112600--Sobic009G242200 Sobic001G112600--Sobic003G441000 Sobic001G112600--Sobic002G170100 Sobic001G414650 Sobic001G414650 Sobic001G112600--Sobic001G414650 Sobic003G244400 Sobic003G244400 Sobic001G112600--Sobic003G244400 Sobic008G055200 Sobic008G055200 Sobic001G112600--Sobic008G055200 Sobic004G358000 Sobic004G358000 Sobic001G112600--Sobic004G358000 Sobic001G112600--Sobic005G144000
Octagon: transcription factors


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