Gene annotation
Transcriptome id Sobic.003G089100.1
Synonym Sb03g007500
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6Q258
Pfam PF00400
Panther DB PTHR19856
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G18060 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os01g03510.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035533 , Zm00025a023662
Brachypodium KQK02500
Barley HORVU3Hr1G004510.3 , HORVU3Hr1G004510.2 , HORVU3Hr1G004510.1
Wheat TraesCS3B02G034400 , TraesCS3D02G031900 , TraesCS3A02G047800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G201500 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
2 Sobic.003G013700 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
3 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
4 Sobic.002G255400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K09569: FK506-binding protein 2
5 Sobic.004G113600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
6 Sobic.001G400000 NAD dependent epimerase/dehydratase family protein, putative, expressed K12448: UXE, UDP-arabinose 4-epimerase
7 Sobic.002G420600 nucleoside-triphosphatase, putative, expressed -
8 Sobic.005G050400 syntaxin 6, putative, expressed -
9 Sobic.001G356200 nucleoside-triphosphatase, putative, expressed K01510: ENTPD1_3_8, apyrase
10 Sobic.006G120900 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
11 Sobic.004G107100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CID11, putative, expressed -
12 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
13 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
14 Sobic.007G014700 Fructokinase-2 (Zm)(PubMedID : 27208977)@kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
15 Sobic.002G362500 expressed protein -
16 Sobic.001G303900 CPuORF23 - conserved peptide uORF-containing transcript, expressed K01087: trehalose 6-phosphate phosphatase
17 Sobic.004G279200 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
18 Sobic.004G284800 protein kinase, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
19 Sobic.004G038500 cyclin-related protein, putative, expressed -
20 Sobic.003G234500 CA(PubMedID : 19549309)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase


Gene co-expression network
sample Sobic003G089100 Sobic003G089100 Sobic003G201500 Sobic003G201500 Sobic003G089100--Sobic003G201500 Sobic003G013700 Sobic003G013700 Sobic003G089100--Sobic003G013700 Sobic003G260600 Sobic003G260600 Sobic003G089100--Sobic003G260600 Sobic002G255400 Sobic002G255400 Sobic003G089100--Sobic002G255400 Sobic004G113600 Sobic004G113600 Sobic003G089100--Sobic004G113600 Sobic001G400000 Sobic001G400000 Sobic003G089100--Sobic001G400000 Sobic002G420600 Sobic002G420600 Sobic003G089100--Sobic002G420600 Sobic005G050400 Sobic005G050400 Sobic003G089100--Sobic005G050400 Sobic001G356200 Sobic001G356200 Sobic003G089100--Sobic001G356200 Sobic003G201500--Sobic003G089100 Sobic003G201500--Sobic003G260600 Sobic003G372200 Sobic003G372200 Sobic003G201500--Sobic003G372200 Sobic003G201500--Sobic002G420600 Sobic003G201500--Sobic002G255400 Sobic001G378800 Sobic001G378800 Sobic003G201500--Sobic001G378800 Sobic006G120900 Sobic006G120900 Sobic003G201500--Sobic006G120900 Sobic003G201500--Sobic001G400000 Sobic004G038500 Sobic004G038500 Sobic003G201500--Sobic004G038500 Sobic004G261800 Sobic004G261800 Sobic003G013700--Sobic004G261800 Sobic003G013700--Sobic005G050400 Sobic001G072000 Sobic001G072000 Sobic003G013700--Sobic001G072000 Sobic008G156600 Sobic008G156600 Sobic003G013700--Sobic008G156600 Sobic003G013700--Sobic003G089100 Sobic009G163100 Sobic009G163100 Sobic003G013700--Sobic009G163100 Sobic001G322400 Sobic001G322400 Sobic003G013700--Sobic001G322400 Sobic002G172401 Sobic002G172401 Sobic003G013700--Sobic002G172401 Sobic001G112600 Sobic001G112600 Sobic003G013700--Sobic001G112600 Sobic003G260600--Sobic002G255400 Sobic003G260600--Sobic003G201500 Sobic003G260600--Sobic003G089100 Sobic008G132200 Sobic008G132200 Sobic003G260600--Sobic008G132200 Sobic003G260600--Sobic001G378800 Sobic003G260600--Sobic003G372200 Sobic003G260600--Sobic002G420600 Sobic008G072500 Sobic008G072500 Sobic003G260600--Sobic008G072500 Sobic007G014700 Sobic007G014700 Sobic003G260600--Sobic007G014700 Sobic002G255400--Sobic003G260600 Sobic002G255400--Sobic003G089100 Sobic002G255400--Sobic007G014700 Sobic008G018300 Sobic008G018300 Sobic002G255400--Sobic008G018300 Sobic002G255400--Sobic002G420600 Sobic002G255400--Sobic003G201500 Sobic002G255400--Sobic003G013700 Sobic002G352200 Sobic002G352200 Sobic002G255400--Sobic002G352200 Sobic001G387200 Sobic001G387200 Sobic002G255400--Sobic001G387200 Sobic004G113600--Sobic001G112600 Sobic003G244400 Sobic003G244400 Sobic004G113600--Sobic003G244400 Sobic004G358000 Sobic004G358000 Sobic004G113600--Sobic004G358000 Sobic009G242200 Sobic009G242200 Sobic004G113600--Sobic009G242200 Sobic002G170100 Sobic002G170100 Sobic004G113600--Sobic002G170100 Sobic004G113600--Sobic005G050400 Sobic001G384200 Sobic001G384200 Sobic004G113600--Sobic001G384200 Sobic004G113600--Sobic001G400000 Sobic005G054150 Sobic005G054150 Sobic004G113600--Sobic005G054150 Sobic001G400000--Sobic004G113600 Sobic001G400000--Sobic001G112600 Sobic001G400000--Sobic001G384200 Sobic001G400000--Sobic005G050400 Sobic001G400000--Sobic003G244400 Sobic006G265800 Sobic006G265800 Sobic001G400000--Sobic006G265800 Sobic004G007400 Sobic004G007400 Sobic001G400000--Sobic004G007400 Sobic008G055600 Sobic008G055600 Sobic001G400000--Sobic008G055600 Sobic001G400000--Sobic008G156600 Sobic002G420600--Sobic003G089100 Sobic004G173700 Sobic004G173700 Sobic002G420600--Sobic004G173700 Sobic002G420600--Sobic006G120900 Sobic002G420600--Sobic003G201500 Sobic002G420600--Sobic002G352200 Sobic002G420600--Sobic002G255400 Sobic001G303900 Sobic001G303900 Sobic002G420600--Sobic001G303900 Sobic002G420600--Sobic003G260600 Sobic002G420600--Sobic003G372200 Sobic005G050400--Sobic001G112600 Sobic005G050400--Sobic001G072000 Sobic005G050400--Sobic008G156600 Sobic005G050400--Sobic009G242200 Sobic005G050400--Sobic002G170100 Sobic003G441000 Sobic003G441000 Sobic005G050400--Sobic003G441000 Sobic005G050400--Sobic004G007400 Sobic005G144000 Sobic005G144000 Sobic005G050400--Sobic005G144000 Sobic005G050400--Sobic009G163100 Sobic001G356200--Sobic004G113600 Sobic001G356200--Sobic001G400000 Sobic003G385300 Sobic003G385300 Sobic001G356200--Sobic003G385300 Sobic007G039200 Sobic007G039200 Sobic001G356200--Sobic007G039200 Sobic001G424800 Sobic001G424800 Sobic001G356200--Sobic001G424800 Sobic004G107100 Sobic004G107100 Sobic001G356200--Sobic004G107100 Sobic001G356200--Sobic003G089100 Sobic003G117800 Sobic003G117800 Sobic001G356200--Sobic003G117800 Sobic006G134500 Sobic006G134500 Sobic001G356200--Sobic006G134500
Octagon: transcription factors


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