Gene annotation
Transcriptome id Sobic.003G260600.2,Sobic.003G260600.1
Synonym Sb03g031470
Functional annotation ATP synthase, putative, expressed
UniProt A0A1B6Q5E4
Pfam PF11421 PF02874 PF00306 PF00006
Panther DB PTHR15184 PTHR15184:SF45
NCBI CDD -
KEGG Orthology K02133; ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
Gene Ontology GO:0016887; ATPase activity GO:0006754ATP biosynthetic process GO:0005524ATP binding GO:0000275mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)


Orthologs (automatic annotation)
TAIR AT5G08680 : ATP synthase alpha/beta family protein
RAP-DB (Rice) LOC_Os01g49190.1 : ATP synthase, putative, expressed
MaizeGDB (Corn) Zm00025a044483 , Zm00025a027996 , Zm00025a036542
Brachypodium KQK05003 , KQK09226
Barley HORVU3Hr1G063590.2 , HORVU3Hr1G063590.3 , HORVU3Hr1G063590.4 , HORVU3Hr1G063590.5 , HORVU3Hr1G063590.6 , HORVU3Hr1G063590.1 , HORVU1Hr1G083840.2 , HORVU1Hr1G083840.3 , HORVU1Hr1G083840.1 , HORVU1Hr1G083840.6 , HORVU1Hr1G083840.7 , HORVU1Hr1G083840.4 , HORVU1Hr1G083840.5 , HORVU1Hr1G083840.8 , HORVU1Hr1G083840.9 , HORVU1Hr1G083840.10 , HORVU1Hr1G083840.11 , HORVU1Hr1G083840.12 , HORVU1Hr1G083840.13 , HORVU1Hr1G083840.14 , HORVU1Hr1G083840.15 , HORVU1Hr1G083840.16 , HORVU1Hr1G083840.17
Wheat TraesCS1B02G400300 , TraesCS3A02G264700 , TraesCS3B02G298000 , TraesCS3B02G298000 , TraesCS3D02G264800 , TraesCS3D02G264800 , TraesCS1B02G400300 , TraesCS1A02G379000
Populus PNT16017 , PNT16019 , PNT24275 , PNT24274 , PNT16018


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cDNA sequences
Sobic.003G260600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G255400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K09569: FK506-binding protein 2
2 Sobic.003G201500 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
3 Sobic.003G089100 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.008G132200 tetratricopeptide repeat domain containing protein, expressed -
5 Sobic.001G378800 fumarate hydratase, mitochondrial precursor, putative, expressed K01679: E4.2.1.2B, fumC, fumarate hydratase, class II
6 Sobic.003G372200 AGC_AGC_other_PDK1_Pk61C.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed K06276: 3-phosphoinositide dependent protein kinase-1
7 Sobic.002G420600 nucleoside-triphosphatase, putative, expressed -
8 Sobic.008G072500 SAM-dependent methyltransferase, putative, expressed K18162: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5
9 Sobic.007G014700 Fructokinase-2 (Zm)(PubMedID : 27208977)@kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
10 Sobic.003G049200 NADH-cytochrome b5 reductase, putative, expressed K00326: cytochrome-b5 reductase
11 Sobic.004G284800 protein kinase, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
12 Sobic.001G282200 ribosomal protein L35, putative, expressed -
13 Sobic.002G070300 expressed protein -
14 Sobic.002G352200 succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed K01899: succinyl-CoA synthetase alpha subunit
15 Sobic.003G028200 expressed protein -
16 Sobic.006G232800 expressed protein K17785: IMMT, FCJ1, mitofilin
17 Sobic.004G017900 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
18 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
19 Sobic.008G018300 expressed protein K17402: small subunit ribosomal protein S23
20 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1


Gene co-expression network
sample Sobic003G260600 Sobic003G260600 Sobic002G255400 Sobic002G255400 Sobic003G260600--Sobic002G255400 Sobic003G201500 Sobic003G201500 Sobic003G260600--Sobic003G201500 Sobic003G089100 Sobic003G089100 Sobic003G260600--Sobic003G089100 Sobic008G132200 Sobic008G132200 Sobic003G260600--Sobic008G132200 Sobic001G378800 Sobic001G378800 Sobic003G260600--Sobic001G378800 Sobic003G372200 Sobic003G372200 Sobic003G260600--Sobic003G372200 Sobic002G420600 Sobic002G420600 Sobic003G260600--Sobic002G420600 Sobic008G072500 Sobic008G072500 Sobic003G260600--Sobic008G072500 Sobic007G014700 Sobic007G014700 Sobic003G260600--Sobic007G014700 Sobic002G255400--Sobic003G260600 Sobic002G255400--Sobic003G089100 Sobic002G255400--Sobic007G014700 Sobic008G018300 Sobic008G018300 Sobic002G255400--Sobic008G018300 Sobic002G255400--Sobic002G420600 Sobic002G255400--Sobic003G201500 Sobic003G013700 Sobic003G013700 Sobic002G255400--Sobic003G013700 Sobic002G352200 Sobic002G352200 Sobic002G255400--Sobic002G352200 Sobic001G387200 Sobic001G387200 Sobic002G255400--Sobic001G387200 Sobic003G201500--Sobic003G089100 Sobic003G201500--Sobic003G260600 Sobic003G201500--Sobic003G372200 Sobic003G201500--Sobic002G420600 Sobic003G201500--Sobic002G255400 Sobic003G201500--Sobic001G378800 Sobic006G120900 Sobic006G120900 Sobic003G201500--Sobic006G120900 Sobic001G400000 Sobic001G400000 Sobic003G201500--Sobic001G400000 Sobic004G038500 Sobic004G038500 Sobic003G201500--Sobic004G038500 Sobic003G089100--Sobic003G201500 Sobic003G089100--Sobic003G013700 Sobic003G089100--Sobic003G260600 Sobic003G089100--Sobic002G255400 Sobic004G113600 Sobic004G113600 Sobic003G089100--Sobic004G113600 Sobic003G089100--Sobic001G400000 Sobic003G089100--Sobic002G420600 Sobic005G050400 Sobic005G050400 Sobic003G089100--Sobic005G050400 Sobic001G356200 Sobic001G356200 Sobic003G089100--Sobic001G356200 Sobic002G070300 Sobic002G070300 Sobic008G132200--Sobic002G070300 Sobic008G132200--Sobic003G260600 Sobic008G132200--Sobic002G255400 Sobic008G132200--Sobic003G372200 Sobic001G385000 Sobic001G385000 Sobic008G132200--Sobic001G385000 Sobic002G167100 Sobic002G167100 Sobic008G132200--Sobic002G167100 Sobic008G132200--Sobic001G378800 Sobic006G232800 Sobic006G232800 Sobic008G132200--Sobic006G232800 Sobic010G253200 Sobic010G253200 Sobic008G132200--Sobic010G253200 Sobic001G378800--Sobic006G232800 Sobic003G394500 Sobic003G394500 Sobic001G378800--Sobic003G394500 Sobic001G047600 Sobic001G047600 Sobic001G378800--Sobic001G047600 Sobic004G077300 Sobic004G077300 Sobic001G378800--Sobic004G077300 Sobic001G378800--Sobic001G356200 Sobic001G378800--Sobic003G372200 Sobic001G424800 Sobic001G424800 Sobic001G378800--Sobic001G424800 Sobic001G378800--Sobic003G260600 Sobic004G350700 Sobic004G350700 Sobic001G378800--Sobic004G350700 Sobic003G372200--Sobic001G378800 Sobic004G284800 Sobic004G284800 Sobic003G372200--Sobic004G284800 Sobic003G372200--Sobic003G201500 Sobic003G372200--Sobic003G260600 Sobic003G372200--Sobic003G089100 Sobic003G372200--Sobic002G420600 Sobic003G372200--Sobic002G167100 Sobic003G372200--Sobic006G232800 Sobic002G362500 Sobic002G362500 Sobic003G372200--Sobic002G362500 Sobic002G420600--Sobic003G089100 Sobic004G173700 Sobic004G173700 Sobic002G420600--Sobic004G173700 Sobic002G420600--Sobic006G120900 Sobic002G420600--Sobic003G201500 Sobic002G420600--Sobic002G352200 Sobic002G420600--Sobic002G255400 Sobic001G303900 Sobic001G303900 Sobic002G420600--Sobic001G303900 Sobic002G420600--Sobic003G260600 Sobic002G420600--Sobic003G372200 Sobic003G049200 Sobic003G049200 Sobic008G072500--Sobic003G049200 Sobic008G072500--Sobic003G260600 Sobic010G133400 Sobic010G133400 Sobic008G072500--Sobic010G133400 Sobic008G072500--Sobic001G378800 Sobic002G193500 Sobic002G193500 Sobic008G072500--Sobic002G193500 Sobic008G072500--Sobic006G232800 Sobic003G048600 Sobic003G048600 Sobic008G072500--Sobic003G048600 Sobic007G118500 Sobic007G118500 Sobic008G072500--Sobic007G118500 Sobic010G086300 Sobic010G086300 Sobic008G072500--Sobic010G086300 Sobic004G261800 Sobic004G261800 Sobic007G014700--Sobic004G261800 Sobic007G014700--Sobic002G255400 Sobic007G014700--Sobic003G089100 Sobic007G014700--Sobic003G013700 Sobic007G014700--Sobic003G260600 Sobic007G014700--Sobic002G420600 Sobic003G284100 Sobic003G284100 Sobic007G014700--Sobic003G284100 Sobic007G014700--Sobic002G352200 Sobic007G014700--Sobic001G303900
Octagon: transcription factors


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