Gene annotation
Transcriptome id Sobic.004G017900.1
Synonym ROP1, Sb04g001690, ATRAC11, ROP1AT, ATROP1, ARAC11
Functional annotation ras-related protein, putative, expressed
UniProt C5XT00
Pfam PF08477
Panther DB PTHR24072 PTHR24072:SF170
NCBI CDD KOG0393; Ras-related small GTPase, Rho type
KEGG Orthology K04392; Ras-related C3 botulinum toxin substrate 1
Gene Ontology GO:0007264; small GTPase mediated signal transduction GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT3G51300 : RHO-related protein from plants 1
RAP-DB (Rice) LOC_Os02g02840.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a034911 , Zm00025a018750
Brachypodium KQK02193 , KQJ92968 , KQJ92969 , KQK01965 , KQK01966 , KQJ94611
Barley HORVU6Hr1G012690.10 , HORVU6Hr1G076210.8 , HORVU6Hr1G076210.9 , HORVU6Hr1G076210.4 , HORVU6Hr1G076210.5 , HORVU6Hr1G076210.6 , HORVU6Hr1G076210.7 , HORVU6Hr1G076210.1 , HORVU6Hr1G076210.2 , HORVU6Hr1G076210.3 , HORVU2Hr1G076740.1 , HORVU7Hr1G038980.9 , HORVU7Hr1G038980.5 , HORVU7Hr1G038980.1 , HORVU6Hr1G012690.6 , HORVU6Hr1G012690.7 , HORVU6Hr1G012690.4 , HORVU6Hr1G012690.5 , HORVU6Hr1G012690.2 , HORVU6Hr1G012690.3 , HORVU6Hr1G012690.1 , HORVU6Hr1G012690.8 , HORVU6Hr1G012690.9 , HORVU1Hr1G076880.10 , HORVU1Hr1G076880.11 , HORVU3Hr1G050750.1 , HORVU3Hr1G050750.2 , HORVU1Hr1G076880.9 , HORVU1Hr1G076880.6 , HORVU1Hr1G076880.7 , HORVU1Hr1G076880.4 , HORVU1Hr1G076880.5 , HORVU1Hr1G076880.1 , HORVU3Hr1G050740.4 , HORVU3Hr1G050740.3 , HORVU3Hr1G050740.2 , HORVU3Hr1G050740.1 , HORVU7Hr1G038980.17 , HORVU7Hr1G038980.16 , HORVU7Hr1G038980.15 , HORVU7Hr1G038980.14 , HORVU7Hr1G038980.13 , HORVU7Hr1G038980.12 , HORVU7Hr1G038980.11 , HORVU7Hr1G038980.10 , HORVU7Hr1G038980.18
Wheat TraesCS6B02G094700 , TraesCS6B02G094700 , TraesCS6B02G094700 , TraesCS6B02G338000 , TraesCS1D02G336200 , TraesCS7B02G096200 , TraesCS7D02G192400 , TraesCS6A02G070700 , TraesCS6A02G070700 , TraesCS6A02G070700 , TraesCS6A02G070700 , TraesCS6A02G309000 , TraesCS1A02G333600 , TraesCS1B02G347000 , TraesCS7A02G191400 , TraesCS6D02G068500 , TraesCS6A02G309000 , TraesCS6D02G068500 , TraesCS6D02G068500 , TraesCS6D02G068500
Populus -


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cDNA sequences
Sobic.004G017900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G260600 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
2 Sobic.001G543400 phosphoglycerate mutase, putative, expressed -
3 Sobic.002G392400 expressed protein -
4 Sobic.007G189100 SFC, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
5 Sobic.008G132200 tetratricopeptide repeat domain containing protein, expressed -
6 Sobic.007G014700 Fructokinase-2 (Zm)(PubMedID : 27208977)@kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
7 Sobic.003G200000 respiratory burst oxidase, putative, expressed -
8 Sobic.002G070300 expressed protein -
9 Sobic.007G043700 oxysterol-binding protein-related protein 6, putative, expressed -
10 Sobic.001G400000 NAD dependent epimerase/dehydratase family protein, putative, expressed K12448: UXE, UDP-arabinose 4-epimerase
11 Sobic.010G253200 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
12 Sobic.001G385000 nucleoside-triphosphatase, putative, expressed K14641: apyrase
13 Sobic.007G030100 galactosyltransferase family protein, putative, expressed -
14 Sobic.002G255400 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K09569: FK506-binding protein 2
15 Sobic.003G089100 WD domain, G-beta repeat domain containing protein, expressed -
16 Sobic.001G352800 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
17 Sobic.002G414800 PPR repeat domain containing protein, putative, expressed -
18 Sobic.002G420100 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
19 Sobic.008G011800 DTW domain containing protein, putative, expressed -
20 Sobic.006G232800 expressed protein K17785: IMMT, FCJ1, mitofilin


Gene co-expression network
sample Sobic004G017900 Sobic004G017900 Sobic003G260600 Sobic003G260600 Sobic004G017900--Sobic003G260600 Sobic001G543400 Sobic001G543400 Sobic004G017900--Sobic001G543400 Sobic002G392400 Sobic002G392400 Sobic004G017900--Sobic002G392400 Sobic007G189100 Sobic007G189100 Sobic004G017900--Sobic007G189100 Sobic008G132200 Sobic008G132200 Sobic004G017900--Sobic008G132200 Sobic007G014700 Sobic007G014700 Sobic004G017900--Sobic007G014700 Sobic003G200000 Sobic003G200000 Sobic004G017900--Sobic003G200000 Sobic002G070300 Sobic002G070300 Sobic004G017900--Sobic002G070300 Sobic007G043700 Sobic007G043700 Sobic004G017900--Sobic007G043700 Sobic002G255400 Sobic002G255400 Sobic003G260600--Sobic002G255400 Sobic003G201500 Sobic003G201500 Sobic003G260600--Sobic003G201500 Sobic003G089100 Sobic003G089100 Sobic003G260600--Sobic003G089100 Sobic003G260600--Sobic008G132200 Sobic001G378800 Sobic001G378800 Sobic003G260600--Sobic001G378800 Sobic003G372200 Sobic003G372200 Sobic003G260600--Sobic003G372200 Sobic002G420600 Sobic002G420600 Sobic003G260600--Sobic002G420600 Sobic008G072500 Sobic008G072500 Sobic003G260600--Sobic008G072500 Sobic003G260600--Sobic007G014700 Sobic002G153000 Sobic002G153000 Sobic001G543400--Sobic002G153000 Sobic001G543400--Sobic002G070300 Sobic008G057900 Sobic008G057900 Sobic001G543400--Sobic008G057900 Sobic001G543400--Sobic003G260600 Sobic001G543400--Sobic004G017900 Sobic001G543400--Sobic007G014700 Sobic004G218600 Sobic004G218600 Sobic001G543400--Sobic004G218600 Sobic004G261800 Sobic004G261800 Sobic001G543400--Sobic004G261800 Sobic001G543400--Sobic008G132200 Sobic007G105700 Sobic007G105700 Sobic002G392400--Sobic007G105700 Sobic002G308000 Sobic002G308000 Sobic002G392400--Sobic002G308000 Sobic001G117900 Sobic001G117900 Sobic002G392400--Sobic001G117900 Sobic002G348400 Sobic002G348400 Sobic002G392400--Sobic002G348400 Sobic002G313100 Sobic002G313100 Sobic002G392400--Sobic002G313100 Sobic003G293400 Sobic003G293400 Sobic002G392400--Sobic003G293400 Sobic001G131900 Sobic001G131900 Sobic002G392400--Sobic001G131900 Sobic006G232800 Sobic006G232800 Sobic002G392400--Sobic006G232800 Sobic010G153400 Sobic010G153400 Sobic002G392400--Sobic010G153400 Sobic001G433600 Sobic001G433600 Sobic007G189100--Sobic001G433600 Sobic007G189100--Sobic003G200000 Sobic001G308500 Sobic001G308500 Sobic007G189100--Sobic001G308500 Sobic007G189100--Sobic001G131900 Sobic007G189100--Sobic002G392400 Sobic005G045800 Sobic005G045800 Sobic007G189100--Sobic005G045800 Sobic007G189100--Sobic007G043700 Sobic003G352900 Sobic003G352900 Sobic007G189100--Sobic003G352900 Sobic004G353300 Sobic004G353300 Sobic007G189100--Sobic004G353300 Sobic008G132200--Sobic002G070300 Sobic008G132200--Sobic003G260600 Sobic008G132200--Sobic002G255400 Sobic008G132200--Sobic003G372200 Sobic001G385000 Sobic001G385000 Sobic008G132200--Sobic001G385000 Sobic002G167100 Sobic002G167100 Sobic008G132200--Sobic002G167100 Sobic008G132200--Sobic001G378800 Sobic008G132200--Sobic006G232800 Sobic010G253200 Sobic010G253200 Sobic008G132200--Sobic010G253200 Sobic007G014700--Sobic004G261800 Sobic007G014700--Sobic002G255400 Sobic007G014700--Sobic003G089100 Sobic003G013700 Sobic003G013700 Sobic007G014700--Sobic003G013700 Sobic007G014700--Sobic003G260600 Sobic007G014700--Sobic002G420600 Sobic003G284100 Sobic003G284100 Sobic007G014700--Sobic003G284100 Sobic002G352200 Sobic002G352200 Sobic007G014700--Sobic002G352200 Sobic001G303900 Sobic001G303900 Sobic007G014700--Sobic001G303900 Sobic003G200000--Sobic005G045800 Sobic009G163100 Sobic009G163100 Sobic003G200000--Sobic009G163100 Sobic003G200000--Sobic007G189100 Sobic004G062600 Sobic004G062600 Sobic003G200000--Sobic004G062600 Sobic001G385300 Sobic001G385300 Sobic003G200000--Sobic001G385300 Sobic003G200000--Sobic003G352900 Sobic008G156600 Sobic008G156600 Sobic003G200000--Sobic008G156600 Sobic004G241300 Sobic004G241300 Sobic003G200000--Sobic004G241300 Sobic002G414800 Sobic002G414800 Sobic003G200000--Sobic002G414800 Sobic002G070300--Sobic008G132200 Sobic007G118500 Sobic007G118500 Sobic002G070300--Sobic007G118500 Sobic002G070300--Sobic001G543400 Sobic002G070300--Sobic003G260600 Sobic001G011000 Sobic001G011000 Sobic002G070300--Sobic001G011000 Sobic003G159700 Sobic003G159700 Sobic002G070300--Sobic003G159700 Sobic002G154800 Sobic002G154800 Sobic002G070300--Sobic002G154800 Sobic002G070300--Sobic001G378800 Sobic002G070300--Sobic002G153000 Sobic008G085950 Sobic008G085950 Sobic007G043700--Sobic008G085950 Sobic007G043700--Sobic001G308500 Sobic008G073500 Sobic008G073500 Sobic007G043700--Sobic008G073500 Sobic007G043700--Sobic007G189100 Sobic007G043700--Sobic007G105700 Sobic007G102000 Sobic007G102000 Sobic007G043700--Sobic007G102000 Sobic007G043700--Sobic010G253200 Sobic007G043700--Sobic001G385300 Sobic001G435700 Sobic001G435700 Sobic007G043700--Sobic001G435700
Octagon: transcription factors


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