Gene annotation
Transcriptome id Sobic.007G189100.1
Synonym VAN3, SFC, AGD3, Sb07g025880
Functional annotation SFC, putative, expressed
UniProt A0A1Z5RAM9
Pfam PF00169 PF03114 PF12796 PF01412
Panther DB PTHR23180 PTHR23180:SF242
NCBI CDD -
KEGG Orthology K12489; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
Gene Ontology GO:0005737; cytoplasm GO:0005515protein binding GO:0005096GTPase activator activity


Orthologs (automatic annotation)
TAIR AT5G13300 : ARF GTPase-activating protein
RAP-DB (Rice) LOC_Os08g42530.1 : SFC, putative, expressed
MaizeGDB (Corn) Zm00025a005312 , Zm00025a040100 , Zm00025a058197 , Zm00025a030457 , Zm00025a047892 , Zm00025a001117 , Zm00025a019848 , Zm00025a036398 , Zm00025a047608
Brachypodium KQJ90968 , PNT64909 , KQJ99167
Barley HORVU7Hr1G055220.31 , HORVU7Hr1G055220.30 , HORVU7Hr1G055220.33 , HORVU7Hr1G055220.32 , HORVU7Hr1G055220.26 , HORVU7Hr1G055220.27 , HORVU7Hr1G055220.24 , HORVU7Hr1G055220.25 , HORVU7Hr1G055220.22 , HORVU7Hr1G055220.23 , HORVU7Hr1G055220.20 , HORVU7Hr1G055220.21 , HORVU7Hr1G055220.28 , HORVU7Hr1G055220.29 , HORVU5Hr1G077570.20 , HORVU5Hr1G077570.21 , HORVU5Hr1G077570.22 , HORVU5Hr1G077570.23 , HORVU5Hr1G077570.24 , HORVU7Hr1G055220.19 , HORVU7Hr1G055220.18 , HORVU7Hr1G055220.16 , HORVU7Hr1G055220.14 , HORVU7Hr1G055220.13 , HORVU7Hr1G055220.12 , HORVU7Hr1G055220.11 , HORVU7Hr1G055220.15 , HORVU7Hr1G055220.17 , HORVU7Hr1G055220.10 , HORVU5Hr1G077570.15 , HORVU5Hr1G077570.14 , HORVU5Hr1G077570.17 , HORVU5Hr1G077570.16 , HORVU5Hr1G077570.11 , HORVU5Hr1G077570.10 , HORVU5Hr1G077570.13 , HORVU5Hr1G077570.12 , HORVU5Hr1G077570.19 , HORVU5Hr1G077570.18 , HORVU5Hr1G077570.1 , HORVU5Hr1G077570.3 , HORVU5Hr1G077570.2 , HORVU5Hr1G077570.4 , HORVU5Hr1G077570.7 , HORVU5Hr1G077570.6 , HORVU5Hr1G077570.9 , HORVU5Hr1G077570.8 , HORVU7Hr1G055220.7 , HORVU7Hr1G055220.6 , HORVU7Hr1G055220.5 , HORVU7Hr1G055220.4 , HORVU7Hr1G055220.3 , HORVU7Hr1G055220.2 , HORVU7Hr1G055220.1 , HORVU7Hr1G055220.9 , HORVU7Hr1G055220.8
Wheat TraesCS7B02G161800 , TraesCS5B02G292200 , TraesCS7D02G264700 , TraesCS7D02G264700 , TraesCS7D02G264700 , TraesCS7A02G263800 , TraesCS7A02G263800 , TraesCS7A02G263800 , TraesCS5D02G300300 , TraesCS5D02G300300 , TraesCS5A02G293000 , TraesCS5A02G293000 , TraesCS7B02G161800 , TraesCS7B02G161800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G189100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G433600 - -
2 Sobic.003G200000 respiratory burst oxidase, putative, expressed -
3 Sobic.001G308500 glycosyltransferase family protein 1, putative, expressed -
4 Sobic.001G131900 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
5 Sobic.002G392400 expressed protein -
6 Sobic.005G045800 serine/threonine-protein kinase WNK4, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
7 Sobic.007G043700 oxysterol-binding protein-related protein 6, putative, expressed -
8 Sobic.003G352900 OsFtsH3 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
9 Sobic.004G353300 growth regulator related protein, putative, expressed -
10 Sobic.003G293400 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
11 Sobic.007G105700 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
12 Sobic.002G308000 powdery mildew resistant protein 5, putative, expressed -
13 Sobic.006G167100 - -
14 Sobic.001G117900 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
15 Sobic.006G265800 OsFBX154 - F-box domain containing protein, expressed -
16 Sobic.002G241100 glycosyl transferase 8 domain containing protein, putative, expressed -
17 Sobic.005G060100 growth regulator related protein, putative, expressed -
18 Sobic.001G385300 auxin-independent growth promoter protein, putative, expressed -
19 Sobic.008G073500 AAA-type ATPase family protein, putative, expressed -
20 Sobic.004G298600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT


Gene co-expression network
sample Sobic007G189100 Sobic007G189100 Sobic001G433600 Sobic001G433600 Sobic007G189100--Sobic001G433600 Sobic003G200000 Sobic003G200000 Sobic007G189100--Sobic003G200000 Sobic001G308500 Sobic001G308500 Sobic007G189100--Sobic001G308500 Sobic001G131900 Sobic001G131900 Sobic007G189100--Sobic001G131900 Sobic002G392400 Sobic002G392400 Sobic007G189100--Sobic002G392400 Sobic005G045800 Sobic005G045800 Sobic007G189100--Sobic005G045800 Sobic007G043700 Sobic007G043700 Sobic007G189100--Sobic007G043700 Sobic003G352900 Sobic003G352900 Sobic007G189100--Sobic003G352900 Sobic004G353300 Sobic004G353300 Sobic007G189100--Sobic004G353300 Sobic001G117900 Sobic001G117900 Sobic001G433600--Sobic001G117900 Sobic002G308000 Sobic002G308000 Sobic001G433600--Sobic002G308000 Sobic005G060100 Sobic005G060100 Sobic001G433600--Sobic005G060100 Sobic007G105700 Sobic007G105700 Sobic001G433600--Sobic007G105700 Sobic009G054400 Sobic009G054400 Sobic001G433600--Sobic009G054400 Sobic004G298600 Sobic004G298600 Sobic001G433600--Sobic004G298600 Sobic001G433600--Sobic007G189100 Sobic001G433600--Sobic001G131900 Sobic007G086600 Sobic007G086600 Sobic001G433600--Sobic007G086600 Sobic003G200000--Sobic005G045800 Sobic009G163100 Sobic009G163100 Sobic003G200000--Sobic009G163100 Sobic003G200000--Sobic007G189100 Sobic004G062600 Sobic004G062600 Sobic003G200000--Sobic004G062600 Sobic001G385300 Sobic001G385300 Sobic003G200000--Sobic001G385300 Sobic003G200000--Sobic003G352900 Sobic008G156600 Sobic008G156600 Sobic003G200000--Sobic008G156600 Sobic004G241300 Sobic004G241300 Sobic003G200000--Sobic004G241300 Sobic002G414800 Sobic002G414800 Sobic003G200000--Sobic002G414800 Sobic006G265800 Sobic006G265800 Sobic001G308500--Sobic006G265800 Sobic008G085950 Sobic008G085950 Sobic001G308500--Sobic008G085950 Sobic001G308500--Sobic001G385300 Sobic009G201000 Sobic009G201000 Sobic001G308500--Sobic009G201000 Sobic001G308500--Sobic003G352900 Sobic010G274800 Sobic010G274800 Sobic001G308500--Sobic010G274800 Sobic001G308500--Sobic009G163100 Sobic001G308500--Sobic004G298600 Sobic008G166100 Sobic008G166100 Sobic001G308500--Sobic008G166100 Sobic003G293400 Sobic003G293400 Sobic001G131900--Sobic003G293400 Sobic001G131900--Sobic003G352900 Sobic004G038400 Sobic004G038400 Sobic001G131900--Sobic004G038400 Sobic001G076600 Sobic001G076600 Sobic001G131900--Sobic001G076600 Sobic001G131900--Sobic001G385300 Sobic001G131900--Sobic005G045800 Sobic001G131900--Sobic004G298600 Sobic002G420100 Sobic002G420100 Sobic001G131900--Sobic002G420100 Sobic007G144100 Sobic007G144100 Sobic001G131900--Sobic007G144100 Sobic002G392400--Sobic007G105700 Sobic002G392400--Sobic002G308000 Sobic002G392400--Sobic001G117900 Sobic002G348400 Sobic002G348400 Sobic002G392400--Sobic002G348400 Sobic002G313100 Sobic002G313100 Sobic002G392400--Sobic002G313100 Sobic002G392400--Sobic003G293400 Sobic002G392400--Sobic001G131900 Sobic006G232800 Sobic006G232800 Sobic002G392400--Sobic006G232800 Sobic010G153400 Sobic010G153400 Sobic002G392400--Sobic010G153400 Sobic005G045800--Sobic003G352900 Sobic003G376900 Sobic003G376900 Sobic005G045800--Sobic003G376900 Sobic005G045800--Sobic001G385300 Sobic002G299500 Sobic002G299500 Sobic005G045800--Sobic002G299500 Sobic005G045800--Sobic001G131900 Sobic005G045800--Sobic003G200000 Sobic008G171900 Sobic008G171900 Sobic005G045800--Sobic008G171900 Sobic005G045800--Sobic009G163100 Sobic005G045800--Sobic007G144100 Sobic007G043700--Sobic008G085950 Sobic007G043700--Sobic001G308500 Sobic008G073500 Sobic008G073500 Sobic007G043700--Sobic008G073500 Sobic007G043700--Sobic007G189100 Sobic007G043700--Sobic007G105700 Sobic007G102000 Sobic007G102000 Sobic007G043700--Sobic007G102000 Sobic010G253200 Sobic010G253200 Sobic007G043700--Sobic010G253200 Sobic007G043700--Sobic001G385300 Sobic001G435700 Sobic001G435700 Sobic007G043700--Sobic001G435700 Sobic003G352900--Sobic007G144100 Sobic003G352900--Sobic002G299500 Sobic003G352900--Sobic001G076600 Sobic003G352900--Sobic003G376900 Sobic003G352900--Sobic009G201000 Sobic003G352900--Sobic005G045800 Sobic003G352900--Sobic009G163100 Sobic003G352900--Sobic001G385300 Sobic008G007600 Sobic008G007600 Sobic003G352900--Sobic008G007600 Sobic004G353300--Sobic001G433600 Sobic004G353300--Sobic007G189100 Sobic004G353300--Sobic007G105700 Sobic004G353300--Sobic002G392400 Sobic010G123100 Sobic010G123100 Sobic004G353300--Sobic010G123100 Sobic004G353300--Sobic002G308000 Sobic005G067966 Sobic005G067966 Sobic004G353300--Sobic005G067966 Sobic004G353300--Sobic001G308500 Sobic004G353300--Sobic008G085950
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.