Gene annotation
Transcriptome id Sobic.008G073500.1,Sobic.008G073500.2
Synonym STI, Sb08g006520
Functional annotation AAA-type ATPase family protein, putative, expressed
UniProt A0A1Z5R644 , A0A1B6PBW9
Pfam PF12169 PF13177
Panther DB PTHR11669 PTHR11669:SF12
NCBI CDD KOG0989; Replication factor C, subunit RFC4
KEGG Orthology -
Gene Ontology GO:0003887; DNA-directed DNA polymerase activity


Orthologs (automatic annotation)
TAIR AT2G02480 : AAA-type ATPase family protein
RAP-DB (Rice) LOC_Os12g10670.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a054454
Brachypodium KQJ88770 , KQJ88771 , KQJ91871 , KQJ91872 , PNT63790
Barley HORVU4Hr1G015110.8 , HORVU4Hr1G015110.9 , HORVU4Hr1G015110.2 , HORVU4Hr1G015110.3 , HORVU4Hr1G015110.1 , HORVU4Hr1G015110.6 , HORVU4Hr1G015110.7 , HORVU4Hr1G015110.4 , HORVU4Hr1G015110.5 , HORVU4Hr1G015110.18 , HORVU4Hr1G015110.19 , HORVU4Hr1G015110.10 , HORVU4Hr1G015110.11 , HORVU4Hr1G015110.12 , HORVU4Hr1G015110.13 , HORVU4Hr1G015110.14 , HORVU4Hr1G015110.15 , HORVU4Hr1G015110.16 , HORVU4Hr1G015110.17 , HORVU4Hr1G015110.20
Wheat TraesCS4A02G226500 , TraesCS4D02G086000 , TraesCS4D02G086000 , TraesCS4B02G090000 , TraesCS4B02G090000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G102000 formin-like protein 13, putative, expressed -
2 Sobic.010G253200 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
3 Sobic.009G025700 cycloeucalenol cycloisomerase, putative, expressed K08246: cycloeucalenol cycloisomerase
4 Sobic.005G060100 growth regulator related protein, putative, expressed -
5 Sobic.001G385300 auxin-independent growth promoter protein, putative, expressed -
6 Sobic.007G043700 oxysterol-binding protein-related protein 6, putative, expressed -
7 Sobic.001G435700 HVA22, putative, expressed K17338: receptor expression-enhancing protein 1/2/3/4
8 Sobic.009G214500 IQ calmodulin-binding motif domain containing protein, expressed -
9 Sobic.008G085950 - -
10 Sobic.001G308500 glycosyltransferase family protein 1, putative, expressed -
11 Sobic.004G241300 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
12 Sobic.009G168100 expressed protein -
13 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
14 Sobic.003G376900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pectinesterase, putative, expressed -
15 Sobic.002G022700 CSLC10 - cellulose synthase-like family C, expressed -
16 Sobic.007G189100 SFC, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
17 Sobic.009G220700 - -
18 Sobic.008G171900 kinesin motor domain containing protein, putative, expressed K10406: kinesin family member C2/C3
19 Sobic.008G104000 cyclin, putative, expressed K06627: cyclin-A
20 Sobic.001G117900 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2


Gene co-expression network
sample Sobic008G073500 Sobic008G073500 Sobic007G102000 Sobic007G102000 Sobic008G073500--Sobic007G102000 Sobic010G253200 Sobic010G253200 Sobic008G073500--Sobic010G253200 Sobic009G025700 Sobic009G025700 Sobic008G073500--Sobic009G025700 Sobic005G060100 Sobic005G060100 Sobic008G073500--Sobic005G060100 Sobic001G385300 Sobic001G385300 Sobic008G073500--Sobic001G385300 Sobic007G043700 Sobic007G043700 Sobic008G073500--Sobic007G043700 Sobic001G435700 Sobic001G435700 Sobic008G073500--Sobic001G435700 Sobic009G214500 Sobic009G214500 Sobic008G073500--Sobic009G214500 Sobic008G085950 Sobic008G085950 Sobic008G073500--Sobic008G085950 Sobic007G102000--Sobic009G214500 Sobic007G102000--Sobic008G085950 Sobic007G102000--Sobic008G073500 Sobic004G241300 Sobic004G241300 Sobic007G102000--Sobic004G241300 Sobic002G390800 Sobic002G390800 Sobic007G102000--Sobic002G390800 Sobic007G102000--Sobic001G385300 Sobic004G298600 Sobic004G298600 Sobic007G102000--Sobic004G298600 Sobic007G102300 Sobic007G102300 Sobic007G102000--Sobic007G102300 Sobic007G105700 Sobic007G105700 Sobic007G102000--Sobic007G105700 Sobic002G420100 Sobic002G420100 Sobic010G253200--Sobic002G420100 Sobic010G253200--Sobic004G241300 Sobic003G423700 Sobic003G423700 Sobic010G253200--Sobic003G423700 Sobic008G104000 Sobic008G104000 Sobic010G253200--Sobic008G104000 Sobic009G042000 Sobic009G042000 Sobic010G253200--Sobic009G042000 Sobic002G186200 Sobic002G186200 Sobic010G253200--Sobic002G186200 Sobic004G261800 Sobic004G261800 Sobic010G253200--Sobic004G261800 Sobic010G253200--Sobic008G073500 Sobic002G308000 Sobic002G308000 Sobic010G253200--Sobic002G308000 Sobic009G220700 Sobic009G220700 Sobic009G025700--Sobic009G220700 Sobic002G201700 Sobic002G201700 Sobic009G025700--Sobic002G201700 Sobic002G167100 Sobic002G167100 Sobic009G025700--Sobic002G167100 Sobic002G362500 Sobic002G362500 Sobic009G025700--Sobic002G362500 Sobic006G050100 Sobic006G050100 Sobic009G025700--Sobic006G050100 Sobic009G163100 Sobic009G163100 Sobic009G025700--Sobic009G163100 Sobic004G026600 Sobic004G026600 Sobic009G025700--Sobic004G026600 Sobic002G309100 Sobic002G309100 Sobic009G025700--Sobic002G309100 Sobic008G156600 Sobic008G156600 Sobic009G025700--Sobic008G156600 Sobic005G060100--Sobic007G105700 Sobic005G060100--Sobic007G102300 Sobic005G060100--Sobic001G385300 Sobic003G216600 Sobic003G216600 Sobic005G060100--Sobic003G216600 Sobic001G433600 Sobic001G433600 Sobic005G060100--Sobic001G433600 Sobic005G060100--Sobic004G298600 Sobic001G117900 Sobic001G117900 Sobic005G060100--Sobic001G117900 Sobic003G352900 Sobic003G352900 Sobic005G060100--Sobic003G352900 Sobic001G131900 Sobic001G131900 Sobic005G060100--Sobic001G131900 Sobic003G376900 Sobic003G376900 Sobic001G385300--Sobic003G376900 Sobic002G299500 Sobic002G299500 Sobic001G385300--Sobic002G299500 Sobic001G385300--Sobic003G352900 Sobic001G385300--Sobic009G163100 Sobic008G171900 Sobic008G171900 Sobic001G385300--Sobic008G171900 Sobic005G045800 Sobic005G045800 Sobic001G385300--Sobic005G045800 Sobic007G141600 Sobic007G141600 Sobic001G385300--Sobic007G141600 Sobic005G020600 Sobic005G020600 Sobic001G385300--Sobic005G020600 Sobic001G385300--Sobic004G298600 Sobic007G043700--Sobic008G085950 Sobic001G308500 Sobic001G308500 Sobic007G043700--Sobic001G308500 Sobic007G043700--Sobic008G073500 Sobic007G189100 Sobic007G189100 Sobic007G043700--Sobic007G189100 Sobic007G043700--Sobic007G105700 Sobic007G043700--Sobic007G102000 Sobic007G043700--Sobic010G253200 Sobic007G043700--Sobic001G385300 Sobic007G043700--Sobic001G435700 Sobic001G435700--Sobic008G171900 Sobic001G435700--Sobic009G163100 Sobic001G435700--Sobic008G156600 Sobic004G093100 Sobic004G093100 Sobic001G435700--Sobic004G093100 Sobic001G435700--Sobic005G020600 Sobic001G435700--Sobic004G241300 Sobic001G435700--Sobic003G376900 Sobic005G050400 Sobic005G050400 Sobic001G435700--Sobic005G050400 Sobic010G238300 Sobic010G238300 Sobic001G435700--Sobic010G238300 Sobic009G214500--Sobic007G102300 Sobic009G214500--Sobic001G385300 Sobic009G214500--Sobic007G102000 Sobic009G214500--Sobic009G163100 Sobic001G327100 Sobic001G327100 Sobic009G214500--Sobic001G327100 Sobic001G380700 Sobic001G380700 Sobic009G214500--Sobic001G380700 Sobic009G214500--Sobic003G376900 Sobic009G214500--Sobic004G241300 Sobic009G214500--Sobic003G423700 Sobic008G085950--Sobic001G308500 Sobic008G085950--Sobic007G043700 Sobic008G085950--Sobic007G102000 Sobic008G085950--Sobic007G105700 Sobic003G194800 Sobic003G194800 Sobic008G085950--Sobic003G194800 Sobic008G047500 Sobic008G047500 Sobic008G085950--Sobic008G047500 Sobic008G085950--Sobic001G385300 Sobic008G085950--Sobic001G327100 Sobic008G085950--Sobic005G060100
Octagon: transcription factors


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